Factsheet for GSMUA_Achr1P00430_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P12510_001	Banana	nucleus	55.49	78.69
GSMUA_Achr5P12500_001	Banana	mitochondrion, nucleus	34.1	76.62
HORVU4Hr1G072090.1	Barley	nucleus	60.98	67.85
Os10t0440100-00	Rice	nucleus	64.74	64.74
EER91566	Sorghum	nucleus	62.72	63.82
TraesCS1D01G139300.1	Wheat	plastid	64.16	63.79
TraesCS1A01G139700.1	Wheat	plastid	64.16	63.79
TraesCS1B01G156900.1	Wheat	plastid	64.16	63.79
KXG21054	Sorghum	nucleus	50.0	59.86
Os03t0152100-01	Rice	nucleus	18.5	59.81
Zm00001d027709_P002	Maize	nucleus	66.47	59.59
EER95490	Sorghum	nucleus	66.76	58.93
TraesCS4B01G268800.1	Wheat	nucleus	63.87	58.31
TraesCS4A01G036000.1	Wheat	plastid	63.58	57.74
TraesCS4D01G268100.2	Wheat	nucleus	64.45	57.33
EES08854	Sorghum	nucleus	53.18	55.09
Zm00001d048412_P001	Maize	plastid	62.14	52.44
Zm00001d014132_P001	Maize	nucleus	29.77	47.91
GSMUA_Achr3P16470_001	Banana	nucleus	33.53	41.58

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.20.140.80	MapMan:13.1.2.3	MapMan:15.5.10	ncoils:Coil	InterPro:E2F-DP_heterodim
InterPro:E2F_WHTH_DNA-bd_dom	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005667	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0007049	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr1G00430_001	EnsemblPlants:GSMUA_Achr1P00430_001	EnsemblPlants:GSMUA_Achr1T00430_001	InterPro:IPR036388	InterPro:IPR038168
UniProt:M0RVV1	PFAM:PF02319	PFAM:PF08781	PIRSF:PIRSF009404	PANTHER:PTHR12548	PANTHER:PTHR12548:SF15
SMART:SM01138	SMART:SM01372	SUPFAM:SSF144074	SUPFAM:SSF46785	InterPro:TF_DP_C_sf	InterPro:Transc_factor_DP_C
InterPro:Transcrpt_fac_DP	UniParc:UPI000296A2B6	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	SEG:seg	:

Description

transcription factor Dp, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr1G00430_001]

Coordinates

chr1:-:394157..401487

Molecular Weight (calculated)

37632.0 Da

IEP (calculated)

7.021

GRAVY (calculated)

-0.756

Length

346 amino acids

Sequence
(BLAST)

001: MDEGSKSTAS FPKVASGSRS SLGTPAFSGG HSASTSGSAG SPSSRSDPAA RTPASENTLV RLNHLDIQGE DEGTPEGAVS GKKKKRGVRA VGGDKSGRGL
101: RQFSMKVCEK VESKGRTTYN EVADELVTEF TDPNNNPGSQ DQYDEKNIRR RVYDALNVLM AMDIISKDKK EIQWKGLPRT SLNDIEELKA ERTGLKNRIE
201: KKTAYLQELQ DQFIGLQNLV QRNEQLYGSG HIPSGGVALP FILVQTRPHA TVEVEISEDM QLVHFDFNST PFELHDDSYV LKAMGLCERG QHDGAPEPSS
301: NGGDCSSMSG MYQHETSQGS RSSSMGKMIT SPPKPGILKA RVKNEH

Best Arabidopsis Sequence Match ( AT5G03415.1 )
(BLAST)

001: MTTTGSNSNH NHHESNNNNN NPSTRSWGTA VSGQSVSTSG SMGSPSSRSE QTITVVTSTS DTTFQRLNNL DIQGDDAGSQ GASGVKKKKR GQRAAGPDKT
101: GRGLRQFSMK VCEKVESKGR TTYNEVADEL VAEFALPNND GTSPDQQQYD EKNIRRRVYD ALNVLMAMDI ISKDKKEIQW RGLPRTSLSD IEELKNERLS
201: LRNRIEKKTA YSQELEEQYV GLQNLIQRNE HLYSSGNAPS GGVALPFILV QTRPHATVEV EISEDMQLVH FDFNSTPFEL HDDNFVLKTM KFCDQPPQQP
301: NGRNNSQLVC HNFTPENPNK GPSTGPTPQL DMYETHLQSQ QHQQHSQLQI IPMPETNNVT SSADTAPVKS PSLPGIMNSS MKPEN

Arabidopsis Description

DPBTranscription factor-like protein DPB [Source:UniProtKB/Swiss-Prot;Acc:Q9FNY2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.