CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d027709_P002	Maize	nucleus	92.35	93.78
Zm00001d048412_P001	Maize	plastid	87.5	83.66
HORVU4Hr1G072090.1	Barley	nucleus	63.52	80.06
TraesCS4B01G268800.1	Wheat	nucleus	73.47	75.99
TraesCS4A01G036000.1	Wheat	plastid	72.45	74.54
TraesCS4D01G268100.2	Wheat	nucleus	73.47	74.04
EER91566	Sorghum	nucleus	63.52	73.24
Os03t0152100-01	Rice	nucleus	19.9	72.9
GSMUA_Achr1P00430_001	Banana	nucleus	58.93	66.76
KXG21054	Sorghum	nucleus	48.21	65.4
EES08854	Sorghum	nucleus	53.06	62.28
GSMUA_Achr5P12510_001	Banana	nucleus	34.69	55.74
OQU87325	Sorghum	plastid	27.55	36.24

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.20.140.80	MapMan:13.1.2.3	MapMan:15.5.10	EntrezGene:8080545	UniProt:C5WXV1
ncoils:Coil	InterPro:E2F-DP_heterodim	InterPro:E2F_WHTH_DNA-bd_dom	EnsemblPlants:EER95490	ProteinID:EER95490	ProteinID:EER95490.1
GO:GO:0000981	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005667	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0006357	GO:GO:0007049	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:IPR036388	InterPro:IPR038168	PFAM:PF02319	PFAM:PF08781
PIRSF:PIRSF009404	PANTHER:PTHR12548	PANTHER:PTHR12548:SF15	SMART:SM01138	SMART:SM01372	EnsemblPlantsGene:SORBI_3001G501000
SUPFAM:SSF144074	SUPFAM:SSF46785	InterPro:TF_DP_C_sf	InterPro:Transc_factor_DP_C	InterPro:Transcrpt_fac_DP	UniParc:UPI0001A83002
InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	RefSeq:XP_002468492.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr1:-:77018201..77025143

Molecular Weight (calculated)

42217.1 Da

IEP (calculated)

6.656

GRAVY (calculated)

-0.780

Length

392 amino acids

Sequence
(BLAST)

001: MVSGTAHNPD GGGGAQGTQR QPPPPPHTQV GARTPLATPP PVSGGAAHSA STSGGSAGSP PSSRSEQHAP DGAGKGPALG AAPAAAAAAS TPASDSTFLR
101: LNNLDINGDD APSSQAPTSK KKRRGTRAVG PDKGNRGLRQ FSMKVCEKVE SKGRTTYNEV ADELVAEFTD PNNNIEAPDP DNPNAQQYDE KNIRRRVYDA
201: LNVLMAMDII SKDKKEIQWK GLPRTSISDI EELKKEVVGL KGRIEKKSAY LQELQDQYVG LQNLIQRNEQ LYGSGNTPSG GVDLPFILVQ TRPHATVEVE
301: ISEDMQLVHF DFNSTPFELH DDSYVLKEMR FCGKEQHEGA QESTSNGGES SSMSNIYWQQ VHHLERPNNG TVRLPSSPPI PGILKGRVKH EH

Best Arabidopsis Sequence Match ( AT5G03415.1 )
(BLAST)

001: MTTTGSNSNH NHHESNNNNN NPSTRSWGTA VSGQSVSTSG SMGSPSSRSE QTITVVTSTS DTTFQRLNNL DIQGDDAGSQ GASGVKKKKR GQRAAGPDKT
101: GRGLRQFSMK VCEKVESKGR TTYNEVADEL VAEFALPNND GTSPDQQQYD EKNIRRRVYD ALNVLMAMDI ISKDKKEIQW RGLPRTSLSD IEELKNERLS
201: LRNRIEKKTA YSQELEEQYV GLQNLIQRNE HLYSSGNAPS GGVALPFILV QTRPHATVEV EISEDMQLVH FDFNSTPFEL HDDNFVLKTM KFCDQPPQQP
301: NGRNNSQLVC HNFTPENPNK GPSTGPTPQL DMYETHLQSQ QHQQHSQLQI IPMPETNNVT SSADTAPVKS PSLPGIMNSS MKPEN

Arabidopsis Description

DPBTranscription factor-like protein DPB [Source:UniProtKB/Swiss-Prot;Acc:Q9FNY2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.