CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os10t0440100-00	Rice	nucleus	79.12	77.75
TraesCS1B01G156900.1	Wheat	plastid	79.41	77.59
TraesCS1D01G139300.1	Wheat	plastid	79.41	77.59
TraesCS1A01G139700.1	Wheat	plastid	78.24	76.44
KXG21054	Sorghum	nucleus	63.53	74.74
EES08854	Sorghum	nucleus	72.35	73.65
EER95490	Sorghum	nucleus	73.24	63.52
Zm00001d014132_P001	Maize	nucleus	40.0	63.26
GSMUA_Achr1P00430_001	Banana	nucleus	63.82	62.72
GSMUA_Achr5P12510_001	Banana	nucleus	38.24	53.28
OQU87325	Sorghum	plastid	30.59	34.9

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.20.140.80	MapMan:13.1.2.3	MapMan:15.5.10	EntrezGene:8059323	UniProt:C5X0H5
ncoils:Coil	InterPro:E2F-DP_heterodim	InterPro:E2F_WHTH_DNA-bd_dom	EnsemblPlants:EER91566	ProteinID:EER91566	ProteinID:EER91566.1
GO:GO:0000981	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005667	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0006357	GO:GO:0007049	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:IPR036388	InterPro:IPR038168	PFAM:PF02319	PFAM:PF08781
PIRSF:PIRSF009404	PANTHER:PTHR12548	PANTHER:PTHR12548:SF15	SMART:SM01138	SMART:SM01372	EnsemblPlantsGene:SORBI_3001G237600
SUPFAM:SSF144074	SUPFAM:SSF46785	InterPro:TF_DP_C_sf	InterPro:Transc_factor_DP_C	InterPro:Transcrpt_fac_DP	UniParc:UPI0001A81F5D
InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	RefSeq:XP_002464568.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr1:+:24202992..24210935

Molecular Weight (calculated)

36650.0 Da

IEP (calculated)

6.793

GRAVY (calculated)

-0.682

Length

340 amino acids

Sequence
(BLAST)

001: MVSGAGPSGG AAHSASTGGG GGSPSDRGGA APSASASVST PASESTVARR LNGLDLQGDD APSSQPAASK KKKKGSRAVG PDKNGRGLRQ FSMRVCEKVE
101: SKGRTTYNEV ADELVAEFSD PNINIDSPDP DNPSAQQYDE KNIRRRVYDA LNVLMAMEII SKDKKEIQWR GLPKTSMNDI EELKTEVIRL KGRIDKKAAY
201: LQDLQDQYVC LQNLVRRNEQ LYGSGDAPSG GVALPFILVK TRPHATVEVE ISEDMQLVHF DFNSTPFELQ DDTFVLKAMG LSGKEENDCT QAPVVNGGEC
301: SSTPNNYWHQ SPQPPGPRGV RVPNSPPIPG ILKGRVKHEH

Best Arabidopsis Sequence Match ( AT5G03415.1 )
(BLAST)

001: MTTTGSNSNH NHHESNNNNN NPSTRSWGTA VSGQSVSTSG SMGSPSSRSE QTITVVTSTS DTTFQRLNNL DIQGDDAGSQ GASGVKKKKR GQRAAGPDKT
101: GRGLRQFSMK VCEKVESKGR TTYNEVADEL VAEFALPNND GTSPDQQQYD EKNIRRRVYD ALNVLMAMDI ISKDKKEIQW RGLPRTSLSD IEELKNERLS
201: LRNRIEKKTA YSQELEEQYV GLQNLIQRNE HLYSSGNAPS GGVALPFILV QTRPHATVEV EISEDMQLVH FDFNSTPFEL HDDNFVLKTM KFCDQPPQQP
301: NGRNNSQLVC HNFTPENPNK GPSTGPTPQL DMYETHLQSQ QHQQHSQLQI IPMPETNNVT SSADTAPVKS PSLPGIMNSS MKPEN

Arabidopsis Description

DPBTranscription factor-like protein DPB [Source:UniProtKB/Swiss-Prot;Acc:Q9FNY2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.