CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER91566	Sorghum	nucleus	73.65	72.35
KXG21054	Sorghum	nucleus	58.08	67.13
Os10t0440100-00	Rice	nucleus	66.47	64.16
TraesCS1B01G156900.1	Wheat	plastid	63.47	60.92
TraesCS1D01G139300.1	Wheat	plastid	63.47	60.92
TraesCS1A01G139700.1	Wheat	plastid	62.87	60.34
GSMUA_Achr1P00430_001	Banana	nucleus	55.09	53.18
EER95490	Sorghum	nucleus	62.28	53.06
Zm00001d014132_P001	Maize	nucleus	33.23	51.63
GSMUA_Achr5P12510_001	Banana	nucleus	35.63	48.77
OQU87325	Sorghum	plastid	28.14	31.54

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.20.140.80	MapMan:13.1.2.3	MapMan:15.5.10	EntrezGene:8079108	UniProt:C5Y6G1
ncoils:Coil	InterPro:E2F-DP_heterodim	InterPro:E2F_WHTH_DNA-bd_dom	EnsemblPlants:EES08854	ProteinID:EES08854	ProteinID:EES08854.1
GO:GO:0000981	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005667	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0006357	GO:GO:0007049	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:IPR036388	InterPro:IPR038168	PFAM:PF02319	PFAM:PF08781
PIRSF:PIRSF009404	PANTHER:PTHR12548	PANTHER:PTHR12548:SF15	SMART:SM01138	SMART:SM01372	EnsemblPlantsGene:SORBI_3005G189100
SUPFAM:SSF144074	SUPFAM:SSF46785	unigene:Sbi.6038	InterPro:TF_DP_C_sf	InterPro:Transc_factor_DP_C	InterPro:Transcrpt_fac_DP
UniParc:UPI0001A8650A	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	RefSeq:XP_002449866.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr5:+:67379663..67386385

Molecular Weight (calculated)

36507.0 Da

IEP (calculated)

6.789

GRAVY (calculated)

-0.793

Length

334 amino acids

Sequence
(BLAST)

001: MPTTGGGGGS SASDKGGSAS SSSASLPTPP PCESTVAWPL PLNGLDIPGD DTPSSQPAAT ASKKKRRGAR AVGPDKNGGG LRQFSMRVRE KVESKGRTTY
101: NEVADELVAE FLDPKTNIDT LDHDNPSAQQ YDEKNIRRRV YDALNVLKAM DIISKDKKEI QWKGLPKTSM NDIEELKKEV TGLKDRIKKK NEYLQELEEQ
201: YVCLQNLGRR NKQLYELGVA PSRTLALPFI LLQTRHGANV QVELSEDEQT VHVDFDSAPY ELRDESFVMK AMGLCGKQEN DCTQAPVANG GECSSTPNNH
301: WDQTPQPPSG PRGVRVPNAP PIPGILKGPV KHEH

Best Arabidopsis Sequence Match ( AT5G03415.1 )
(BLAST)

001: MTTTGSNSNH NHHESNNNNN NPSTRSWGTA VSGQSVSTSG SMGSPSSRSE QTITVVTSTS DTTFQRLNNL DIQGDDAGSQ GASGVKKKKR GQRAAGPDKT
101: GRGLRQFSMK VCEKVESKGR TTYNEVADEL VAEFALPNND GTSPDQQQYD EKNIRRRVYD ALNVLMAMDI ISKDKKEIQW RGLPRTSLSD IEELKNERLS
201: LRNRIEKKTA YSQELEEQYV GLQNLIQRNE HLYSSGNAPS GGVALPFILV QTRPHATVEV EISEDMQLVH FDFNSTPFEL HDDNFVLKTM KFCDQPPQQP
301: NGRNNSQLVC HNFTPENPNK GPSTGPTPQL DMYETHLQSQ QHQQHSQLQI IPMPETNNVT SSADTAPVKS PSLPGIMNSS MKPEN

Arabidopsis Description

DPBTranscription factor-like protein DPB [Source:UniProtKB/Swiss-Prot;Acc:Q9FNY2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.