Factsheet for GSMUA_Achr6P12080_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P16370_001	Banana	cytosol	90.16	90.16
GSMUA_Achr10P...	Banana	cytosol	89.38	89.38
VIT_17s0000g10250.t01	Wine grape	cytosol	88.86	88.86
KRH03906	Soybean	nucleus	84.46	84.46
OQU85258	Sorghum	cytosol	84.97	84.32
Zm00001d017117_P001	Maize	plasma membrane	84.72	84.06
Os04t0485000-01	Rice	plasma membrane	84.46	83.8
KXG26586	Sorghum	cytosol	84.2	83.76
CDX92654	Canola	cytosol	83.68	83.46
Solyc07g009140.2.1	Tomato	nucleus	83.16	83.16
PGSC0003DMT400062214	Potato	cytosol	83.16	83.16
HORVU2Hr1G083860.1	Barley	cytosol	82.9	82.47
CDY03414	Canola	cytosol	82.64	82.43
KRH57185	Soybean	cytosol	82.38	82.38
KRH57190	Soybean	cytosol	81.87	82.29
TraesCS6D01G195300.1	Wheat	golgi, unclear	84.2	82.28
TraesCS2D01G341500.1	Wheat	golgi, unclear	82.64	82.22
TraesCS2B01G361900.1	Wheat	golgi, plastid	82.64	82.22
TraesCS2A01G320800.1	Wheat	cytosol	82.64	82.22
CDY34315	Canola	cytosol	82.38	82.17
Bra013838.1-P	Field mustard	cytosol	82.38	82.17
TraesCS6B01G242700.1	Wheat	cytosol	83.94	82.03
AT4G24820.1	Thale cress	cytosol	81.35	81.14
TraesCS6A01G212300.1	Wheat	cytosol	84.46	81.09
HORVU6Hr1G054100.2	Barley	cytosol, nucleus	84.2	77.2
HORVU0Hr1G004970.2	Barley	cytosol	77.2	75.44
CDY08956	Canola	extracellular, golgi	57.51	66.47
Zm00001d003257_P002	Maize	plastid	79.02	58.99
CDY34374	Canola	nucleus	18.91	58.87
PGSC0003DMT400062212	Potato	cytosol	14.77	39.86
GSMUA_Achr11P...	Banana	cytosol	21.24	18.14
GSMUA_Achr11P...	Banana	cytosol	20.98	18.0
GSMUA_Achr8P11930_001	Banana	cytosol	20.98	17.84

Protein Annotations

Gene3D:1.25.40.570	MapMan:19.2.6.2.2.6	ncoils:Coil	GO:GO:0003674	GO:GO:0008150	GO:GO:0030234
GO:GO:0050790	EnsemblPlantsGene:GSMUA_Achr6G12080_001	EnsemblPlants:GSMUA_Achr6P12080_001	EnsemblPlants:GSMUA_Achr6T12080_001	InterPro:IPR000717	UniProt:M0T6A6
InterPro:PCI_dom	PFAM:PF01399	PFAM:PF10602	PFscan:PS50250	InterPro:PSMD6	PANTHER:PTHR14145
PANTHER:PTHR14145:SF1	InterPro:Rpn7/CSN1	SMART:SM00088	SMART:SM00753	SUPFAM:SSF46785	UniParc:UPI0002962178
InterPro:WH_DNA-bd_sf	SEG:seg	:	:	:	:

Description

26S proteasome non-ATPase regulatory subunit 6 [Source:GMGC_GENE;Acc:GSMUA_Achr6G12080_001]

Coordinates

chr6:-:8070418..8074911

Molecular Weight (calculated)

44126.2 Da

IEP (calculated)

5.358

GRAVY (calculated)

-0.138

Length

386 amino acids

Sequence
(BLAST)

001: MEAQQGTQEL HLALAHKLFL LSHPDIDDIE KVRLRDEVLD AVKTDDMSSL YETLAAASVL EMDATVLDSM RRRIDNELKK LDDKIADAEE NLGESEVREA
101: HLAKSLFYIQ IGDKDKALEQ LKTTEGKTVA VGQKMDLVFY TLQLGLFYMD FDLISKSIDK AKNLFEEGGD WERKNRLKVY EGLYCMATRN FKKAANLFLD
201: SISTFTTYEL LSYDTFIFYT VLTSIISLDR VSLKQKVVDA PEILTVIGKI PHLSEFLNSL YGCQYKSFFS AFSGLTEQIK LDRYLQPHFR FYMREVRTVV
301: YSQFLESYKS VTMEAMATAF GVSVDFIDLE LSRFIAAGKL HCKIDKVAGV LETNRPDAKN ALYQATIKQG DFLLNRIQKL SRVIDL

Best Arabidopsis Sequence Match ( AT4G24820.2 )
(BLAST)

001: MDGGAEGSQQ PHLILANKLF LLTHPDVPDI EKVQLKSEVL DFIRSHGMAP LYETLIASSV LDLDQSLLES MRAANEEELK KLDEKIADAE ENLGESEVRE
101: AHLAKALYFI RISDKEKALE QLKLTEGKTV AVGQKMDVVF YTLQLAFFYM DFDLVSKSID KAKKLFEEGG DWERKNRLKV YEGLYCMSTR NFKKAASLFL
201: DSISTFTTYE IFPYETFIFY TVLTSIITLD RVSLKQKVVD APEILTVLGK IPFLSEFLNS LYECQYKAFF SAFAGMAVQI KYDRYLYPHF RFYMREVRTV
301: VYSQFLESYK SVTVEAMAKA FGVSVDFIDQ ELSRFIAAGK LHCKIDKVAG VLETNRPDAK NALYQATIKQ GDFLLNRIQK LSRVIDL

Arabidopsis Description

RPN726S proteasome non-ATPase regulatory subunit 6 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q93Y35]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.