Factsheet for Os04t0485000-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 27800704
plastid: 27992503
plasma membrane: 28056797

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 28056797 doi

N Yang, T Wang

Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China., Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China. twang@ibcas.ac.cn.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU2Hr1G083860.1	Barley	cytosol	92.03	92.27
KXG26586	Sorghum	cytosol	91.77	92.01
TraesCS2B01G361900.1	Wheat	golgi, plastid	91.52	91.75
TraesCS2D01G341500.1	Wheat	golgi, unclear	91.26	91.49
TraesCS2A01G320800.1	Wheat	cytosol	91.26	91.49
GSMUA_Achr8P16370_001	Banana	cytosol	85.6	86.27
GSMUA_Achr6P12080_001	Banana	cytosol	83.8	84.46
VIT_17s0000g10250.t01	Wine grape	cytosol	83.55	84.2
KRH03906	Soybean	nucleus	83.03	83.68
GSMUA_Achr10P...	Banana	cytosol	81.49	82.12
Bra013838.1-P	Field mustard	cytosol	81.49	81.91
CDX92654	Canola	cytosol	81.49	81.91
CDY34315	Canola	cytosol	81.49	81.91
KRH57185	Soybean	cytosol	81.23	81.87
HORVU0Hr1G004970.2	Barley	cytosol	83.03	81.77
PGSC0003DMT400062214	Potato	cytosol	80.98	81.61
Solyc07g009140.2.1	Tomato	nucleus	80.98	81.61
KRH57190	Soybean	cytosol	80.46	81.51
CDY03414	Canola	cytosol	80.98	81.4
AT4G24820.1	Thale cress	cytosol	80.21	80.62
CDY08956	Canola	extracellular, golgi	57.07	66.47
Zm00001d003257_P002	Maize	plastid	84.58	63.64
CDY34374	Canola	nucleus	19.28	60.48
PGSC0003DMT400062212	Potato	cytosol	14.65	39.86
Os03t0116500-01	Rice	cytosol	21.85	19.27
Os01t0974900-00	Rice	cytosol	1.54	6.82

Protein Annotations

Gene3D:1.25.40.570	MapMan:19.2.6.2.2.6	EntrezGene:4336206	EMBL:AB037149	EMBL:AK068887	EMBL:AK104327
ProteinID:BAF15043.1	ProteinID:BAS89781.1	ProteinID:CAD41392.2	ProteinID:CAE03153.2	ncoils:Coil	ProteinID:EAZ31143.1
GO:GO:0000502	GO:GO:0003674	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005829	GO:GO:0005886	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987
GO:GO:0016020	GO:GO:0019538	GO:GO:0030234	GO:GO:0043161	GO:GO:0050790	InterPro:IPR000717
EnsemblPlantsGene:Os04g0485000	EnsemblPlants:Os04t0485000-01	InterPro:PCI_dom	PFAM:PF01399	PFAM:PF10602	PFscan:PS50250
InterPro:PSMD6	PANTHER:PTHR14145	PANTHER:PTHR14145:SF1	UniProt:Q8W425	InterPro:Rpn7/CSN1	SMART:SM00088
SMART:SM00753	SUPFAM:SSF46785	UniParc:UPI0000132788	InterPro:WH_DNA-bd_sf	RefSeq:XP_015635802.1	:

Description

19S REGULATORY PARTICLE NON-ATPASE SUBUNIT 7Similar to 26S proteasome subunit RPN7. (Os04t0485000-01)

Coordinates

chr4:+:24240921..24243702

Molecular Weight (calculated)

44087.2 Da

IEP (calculated)

5.718

GRAVY (calculated)

-0.082

Length

389 amino acids

Sequence
(BLAST)

001: MDGGVGEEGK QQPHLVLAHK LFLLSHPDVD DLAKVDLRAD VLAAVKSDDM ASLYESLGAG GVLETDAALL AEMRGRIEEE IRKLDEKIAD AEENLGESEV
101: REAHLAKSLY FIRVGEKEKA LEQLKVTEGK TVAVGQKMDL VFHTLQIGFF YMDFDLISKS IDKAKKLFEE GGDWERKNRL KVYEGLYCMA TRNFKKAASL
201: FLDSISTFTT YELFPYDTFI FYTVLTSVIS LDRVSLKAKV VDAPEILAVI GKVPHLSEFL NSLYNCQYKS FFAAFSGLTE QIKLDRYLQP HFRYYMREVR
301: TVVYSQFLES YKSVTMEAMA SAFGVTVDFI DLELSRFIAA GKLHCKIDKV ACVLETNRPD ARNAFYQATI KQGDFLLNRI QKLSRVIDL

Best Arabidopsis Sequence Match ( AT4G24820.2 )
(BLAST)

001: MDGGAEGSQQ PHLILANKLF LLTHPDVPDI EKVQLKSEVL DFIRSHGMAP LYETLIASSV LDLDQSLLES MRAANEEELK KLDEKIADAE ENLGESEVRE
101: AHLAKALYFI RISDKEKALE QLKLTEGKTV AVGQKMDVVF YTLQLAFFYM DFDLVSKSID KAKKLFEEGG DWERKNRLKV YEGLYCMSTR NFKKAASLFL
201: DSISTFTTYE IFPYETFIFY TVLTSIITLD RVSLKQKVVD APEILTVLGK IPFLSEFLNS LYECQYKAFF SAFAGMAVQI KYDRYLYPHF RFYMREVRTV
301: VYSQFLESYK SVTVEAMAKA FGVSVDFIDQ ELSRFIAAGK LHCKIDKVAG VLETNRPDAK NALYQATIKQ GDFLLNRIQK LSRVIDL

Arabidopsis Description

RPN726S proteasome non-ATPase regulatory subunit 6 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q93Y35]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.