Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra013838.1-P | Field mustard | cytosol | 95.61 | 95.61 |
| CDY34315 | Canola | cytosol | 95.61 | 95.61 |
| KRH03906 | Soybean | nucleus | 83.98 | 84.2 |
| VIT_17s0000g10250.t01 | Wine grape | cytosol | 83.46 | 83.68 |
| KRH57190 | Soybean | cytosol | 82.95 | 83.59 |
| KRH57185 | Soybean | cytosol | 82.95 | 83.16 |
| GSMUA_Achr8P16370_001 | Banana | cytosol | 82.69 | 82.9 |
| GSMUA_Achr6P12080_001 | Banana | cytosol | 81.14 | 81.35 |
| Solyc07g009140.2.1 | Tomato | nucleus | 81.14 | 81.35 |
| GSMUA_Achr10P... | Banana | cytosol | 80.62 | 80.83 |
| Zm00001d017117_P001 | Maize | plasma membrane | 80.62 | 80.21 |
| Os04t0485000-01 | Rice | plasma membrane | 80.62 | 80.21 |
| OQU85258 | Sorghum | cytosol | 80.36 | 79.95 |
| HORVU2Hr1G083860.1 | Barley | cytosol | 79.33 | 79.12 |
| TraesCS2A01G320800.1 | Wheat | cytosol | 79.07 | 78.87 |
| TraesCS2B01G361900.1 | Wheat | golgi, plastid | 79.07 | 78.87 |
| TraesCS2D01G341500.1 | Wheat | golgi, unclear | 79.07 | 78.87 |
| KXG26586 | Sorghum | cytosol | 78.55 | 78.35 |
| TraesCS6D01G195300.1 | Wheat | golgi, unclear | 79.33 | 77.72 |
| TraesCS6B01G242700.1 | Wheat | cytosol | 79.07 | 77.47 |
| TraesCS6A01G212300.1 | Wheat | cytosol | 79.59 | 76.62 |
| HORVU6Hr1G054100.2 | Barley | cytosol, nucleus | 79.59 | 73.16 |
| HORVU0Hr1G004970.2 | Barley | cytosol | 73.39 | 71.9 |
| Zm00001d003257_P002 | Maize | plastid | 74.94 | 56.09 |
| PGSC0003DMT400062212 | Potato | cytosol | 14.47 | 39.16 |
| AT3G61140.1 | Thale cress | cytosol | 19.12 | 16.78 |
Protein Annotations
| Gene3D:1.25.40.570 | MapMan:19.2.6.2.2.6 | EntrezGene:828585 | UniProt:A0A178UUL4 | ProteinID:AEE84966.1 | ProteinID:AEE84967.1 |
| ArrayExpress:AT4G24820 | EnsemblPlantsGene:AT4G24820 | RefSeq:AT4G24820 | TAIR:AT4G24820 | RefSeq:AT4G24820-TAIR-G | EnsemblPlants:AT4G24820.1 |
| TAIR:AT4G24820.1 | EMBL:AY054500 | EMBL:AY087847 | EMBL:AY093269 | EMBL:AY230838 | Unigene:At.3132 |
| EMBL:BT000653 | ProteinID:CAB41122.1 | ProteinID:CAB79392.1 | ncoils:Coil | GO:GO:0000502 | GO:GO:0003674 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 | GO:GO:0005829 |
| GO:GO:0005886 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016020 |
| GO:GO:0019538 | GO:GO:0030163 | GO:GO:0030234 | GO:GO:0043161 | GO:GO:0050790 | InterPro:IPR000717 |
| RefSeq:NP_567709.1 | RefSeq:NP_974611.1 | ProteinID:OAO97528.1 | InterPro:PCI_dom | PFAM:PF01399 | PFAM:PF10602 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 |
| PO:PO:0025281 | PFscan:PS50250 | InterPro:PSMD6 | PANTHER:PTHR14145 | PANTHER:PTHR14145:SF1 | UniProt:Q93Y35 |
| InterPro:Rpn7/CSN1 | SMART:SM00088 | SMART:SM00753 | SUPFAM:SSF46785 | UniParc:UPI000000117E | InterPro:WH_DNA-bd_sf |
Description
RPN726S proteasome non-ATPase regulatory subunit 6 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q93Y35]
Coordinates
chr4:-:12790069..12792729
Molecular Weight (calculated)
44284.6 Da
IEP (calculated)
5.776
GRAVY (calculated)
-0.079
Length
387 amino acids
Sequence
(BLAST)
(BLAST)
001: MDGGAEGSQQ PHLILANKLF LLTHPDVPDI EKVQLKSEVL DFIRSHGMAP LYETLIASSV LDLDQSLLES MRAANEEELK KLDEKIADAE ENLGESEVRE
101: AHLAKALYFI RISDKEKALE QLKLTEGKTV AVGQKMDVVF YTLQLAFFYM DFDLVSKSID KAKKLFEEGG DWERKNRLKV YEGLYCMSTR NFKKAASLFL
201: DSISTFTTYE IFPYETFIFY TVLTSIITLD RVSLKQKVVD APEILTVLGK IPFLSEFLNS LYECQYKAFF SAFAGMAVQI KYDRYLYPHF RFYMREVRTV
301: VYSQFLESYK SVTVEAMAKA FGVSVDFIDQ ELSRFIAAGK LHCKIDKVAG VLETNRPDAK NALYQATIKQ GDFLLNRIQK LSRVIDL
101: AHLAKALYFI RISDKEKALE QLKLTEGKTV AVGQKMDVVF YTLQLAFFYM DFDLVSKSID KAKKLFEEGG DWERKNRLKV YEGLYCMSTR NFKKAASLFL
201: DSISTFTTYE IFPYETFIFY TVLTSIITLD RVSLKQKVVD APEILTVLGK IPFLSEFLNS LYECQYKAFF SAFAGMAVQI KYDRYLYPHF RFYMREVRTV
301: VYSQFLESYK SVTVEAMAKA FGVSVDFIDQ ELSRFIAAGK LHCKIDKVAG VLETNRPDAK NALYQATIKQ GDFLLNRIQK LSRVIDL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.