Factsheet for GSMUA_Achr8P11930_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr2P12070_001
GSMUA_Achr2P20500_001
GSMUA_Achr3P04920_001
GSMUA_Achr4P21630_001
GSMUA_Achr6P23660_001
GSMUA_Achr8P11930_001
GSMUA_Achr8P31220_001
GSMUA_Achr9P19410_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G61140.1	GSMUA_Achr2P12070_001	AT1G02090.1	10330469
AT3G61140.1	GSMUA_Achr4P21630_001	AT1G02090.1	10330469
AT3G61140.1	GSMUA_Achr2P12070_001	AT1G02090.1	11742986
AT3G61140.1	GSMUA_Achr4P21630_001	AT1G02090.1	11742986
AT3G61140.1	GSMUA_Achr2P12070_001	AT1G02090.1	11854419
AT3G61140.1	GSMUA_Achr4P21630_001	AT1G02090.1	11854419
AT3G61140.1	GSMUA_Achr2P12070_001	AT1G02090.1	12615944
AT3G61140.1	GSMUA_Achr4P21630_001	AT1G02090.1	12615944
AT3G61140.1	GSMUA_Achr10P...	AT1G22920.1	12615944
AT3G61140.1	GSMUA_Achr10P...	AT1G22920.1	9811788
AT3G61140.1	GSMUA_Achr10P...	AT1G71230.1	9811788
AT3G61140.1	GSMUA_Achr6P23660_001	AT2G26990.1	11854419
AT3G61140.1	GSMUA_Achr6P23660_001	AT2G26990.1	12615944
AT3G61140.1	GSMUA_Achr3P04920_001	AT3G56150.1	11029466
AT3G61140.1	GSMUA_Achr11P...	AT3G61140.1	12615944
AT3G61140.1	GSMUA_Achr11P...	AT3G61140.1	12615944
AT3G61140.1	GSMUA_Achr8P11930_001	AT3G61140.1	12615944
AT3G61140.1	GSMUA_Achr2P20500_001	AT4G14110.1	11701877
AT3G61140.1	GSMUA_Achr2P20500_001	AT4G14110.1	12615944
AT3G61140.1	GSMUA_Achr2P20500_001	AT4G14110.1	9811788
AT3G61140.1	GSMUA_Achr11P...	AT5G14250.1	12615944
AT3G61140.1	GSMUA_AchrUn_...	AT5G14250.1	12615944
AT3G61140.1	GSMUA_Achr8P31220_001	AT5G42970.1	11854419
AT3G61140.1	GSMUA_Achr9P19410_001	AT5G42970.1	11854419
AT3G61140.1	GSMUA_Achr8P31220_001	AT5G42970.1	12615944
AT3G61140.1	GSMUA_Achr9P19410_001	AT5G42970.1	12615944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	cytosol	84.14	84.89
GSMUA_Achr11P...	Banana	cytosol	84.14	84.51
VIT_15s0048g01980.t01	Wine grape	cytosol	74.45	76.64
HORVU0Hr1G029090.1	Barley	endoplasmic reticulum	18.28	74.11
TraesCS1D01G187600.1	Wheat	cytosol	61.89	73.37
Solyc01g091650.2.1	Tomato	cytosol	70.7	72.95
PGSC0003DMT400071374	Potato	cytosol	70.7	72.95
Os03t0116500-01	Rice	cytosol	70.7	72.79
EER92981	Sorghum	cytosol	70.26	72.01
KRH65148	Soybean	cytosol	70.26	71.85
KRH48239	Soybean	cytosol	69.82	71.08
Zm00001d027359_P001	Maize	cytosol, extracellular	69.16	70.56
TraesCS4D01G350200.1	Wheat	cytosol, golgi	69.16	70.4
TraesCS4B01G356500.1	Wheat	cytosol	68.94	70.02
TraesCS5A01G525900.1	Wheat	cytosol, unclear	68.72	69.96
TraesCS1A01G188800.1	Wheat	cytosol	66.96	69.72
AT3G61140.1	Thale cress	cytosol	67.62	69.61
TraesCS1B01G196500.2	Wheat	cytosol	68.06	68.82
CDY45683	Canola	cytosol	66.74	66.89
CDX67853	Canola	cytosol	66.3	66.45
Bra003438.1-P	Field mustard	cytosol	66.3	66.45
Bra007576.1-P	Field mustard	cytosol	63.66	66.28
CDY52333	Canola	cytosol	64.76	66.22
CDY65304	Canola	cytosol	64.32	65.91
HORVU1Hr1G048620.1	Barley	plastid	67.84	63.24
HORVU6Hr1G027500.11	Barley	plastid	37.44	59.86
HORVU4Hr1G086160.1	Barley	cytosol	68.94	56.91
Zm00001d048502_P002	Maize	cytosol	21.15	56.14
TraesCS5D01G238500.1	Wheat	cytosol	33.7	45.95
TraesCS7B01G257700.1	Wheat	plastid	40.53	26.94
GSMUA_Achr8P16370_001	Banana	cytosol	17.84	20.98
GSMUA_Achr6P12080_001	Banana	cytosol	17.84	20.98
GSMUA_Achr10P...	Banana	cytosol	17.18	20.21

Protein Annotations

Gene3D:1.25.40.570	MapMan:19.2.3.3.1.1	InterPro:CSN1	ncoils:Coil	GO:GO:0000338	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0008180	GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSMUA_Achr8G11930_001	EnsemblPlants:GSMUA_Achr8P11930_001	EnsemblPlants:GSMUA_Achr8T11930_001
InterPro:IPR000717	UniProt:M0TPP6	InterPro:PCI_dom	PFAM:PF01399	PFAM:PF10602	PFscan:PS50250
PANTHER:PTHR14145	PANTHER:PTHR14145:SF2	InterPro:Rpn7/CSN1	SMART:SM00088	SMART:SM00753	SUPFAM:SSF46785
UniParc:UPI0002963850	InterPro:WH_DNA-bd_sf	:	:	:	:

Description

COP9 signalosome complex subunit 1 [Source:GMGC_GENE;Acc:GSMUA_Achr8G11930_001]

Coordinates

chr8:-:8646154..8652726

Molecular Weight (calculated)

51422.4 Da

IEP (calculated)

6.561

GRAVY (calculated)

-0.347

Length

454 amino acids

Sequence
(BLAST)

001: MEGDDEATFA AATGYEAMYA NGDAGDDPRL PPTPRSGKAA VGSGGDLMDV EAYAALYTGR TKVARLLFIA ERCGNEGMQL EAFRLAHDEI KKGEDSHLYR
101: EAMAKIGDRL GPRYAIDQVW ADAVDRRAEV RKEKLENELN IYKTNLIKES IRMGYNDLAD FFYAHGQLGD AFKNYVRTRD YCTTSKHIIH MCLNVILVSI
201: ELSQFMHVSN YVSKAEQTPE QLDPVTHSKL RCAAGLAHLE TKKYKLAARK FLETGHELGN NYTEVIAPQD VAIYGGLCAL ASFDRTELKN KVIDNVTFRN
301: FLELVPEVRE LINDFYASRY ASCLEYLENL KPNLLLDIHL HDHVETLYTE IRHKAIIQYT IPFISVDLHT MAGAFKTNVV GLEKELEALI TDNQIQARID
401: SHNKILYARH ADQRNATFQR VLQTGVEFER DVRAMLVRAN LVKHECITRA ARKP

Best Arabidopsis Sequence Match ( AT3G61140.1 )
(BLAST)

001: MERDEEASGP MMEMCTNGGE ETSNRRPIIS GEPLDIEAYA ALYKGRTKIM RLLFIANHCG GNHALQFDAL RMAYDEIKKG ENTQLFREVV NKIGNRLGEK
101: YGMDLAWCEA VDRRAEQKKV KLENELSSYR TNLIKESIRM GYNDFGDFYY ACGMLGDAFK NYIRTRDYCT TTKHIIHMCM NAILVSIEMG QFTHVTSYVN
201: KAEQNPETLE PMVNAKLRCA SGLAHLELKK YKLAARKFLD VNPELGNSYN EVIAPQDIAT YGGLCALASF DRSELKQKVI DNINFRNFLE LVPDVRELIN
301: DFYSSRYASC LEYLASLKSN LLLDIHLHDH VDTLYDQIRK KALIQYTLPF VSVDLSRMAD AFKTSVSGLE KELEALITDN QIQARIDSHN KILYARHADQ
401: RNATFQKVLQ MGNEFDRDVR AMLLRANLLK HEYHARSARK L

Arabidopsis Description

CSN1SK31 [Source:UniProtKB/TrEMBL;Acc:A0A178VFN7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.