Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU7Hr1G069880.1 | Barley | cytosol | 7.45 | 97.62 |
| TraesCS4D01G350200.1 | Wheat | cytosol, golgi | 77.09 | 95.07 |
| TraesCS4B01G356500.1 | Wheat | cytosol | 76.91 | 94.63 |
| TraesCS5A01G525900.1 | Wheat | cytosol, unclear | 76.18 | 93.95 |
| HORVU0Hr1G029090.1 | Barley | endoplasmic reticulum | 18.73 | 91.96 |
| Os03t0116500-01 | Rice | cytosol | 67.82 | 84.58 |
| EER92981 | Sorghum | cytosol | 66.73 | 82.84 |
| Zm00001d027359_P001 | Maize | cytosol, extracellular | 65.64 | 81.12 |
| HORVU6Hr1G027500.11 | Barley | plastid | 38.0 | 73.59 |
| GSMUA_Achr11P... | Banana | cytosol | 56.73 | 69.33 |
| GSMUA_Achr11P... | Banana | cytosol | 56.73 | 69.03 |
| GSMUA_Achr8P11930_001 | Banana | cytosol | 56.91 | 68.94 |
| VIT_15s0048g01980.t01 | Wine grape | cytosol | 54.73 | 68.25 |
| PGSC0003DMT400071374 | Potato | cytosol | 54.55 | 68.18 |
| KRH65148 | Soybean | cytosol | 54.91 | 68.02 |
| Solyc01g091650.2.1 | Tomato | cytosol | 54.18 | 67.73 |
| KRH48239 | Soybean | cytosol | 54.73 | 67.49 |
| Zm00001d048502_P002 | Maize | cytosol | 20.73 | 66.67 |
| HORVU1Hr1G048620.1 | Barley | plastid | 58.36 | 65.91 |
| AT3G61140.1 | Thale cress | cytosol | 51.82 | 64.63 |
| CDY52333 | Canola | cytosol | 51.82 | 64.19 |
| CDY65304 | Canola | cytosol | 51.64 | 64.11 |
| Bra007576.1-P | Field mustard | cytosol | 50.55 | 63.76 |
| CDY45683 | Canola | cytosol | 51.82 | 62.91 |
| Bra003438.1-P | Field mustard | cytosol | 51.64 | 62.69 |
| CDX67853 | Canola | cytosol | 51.64 | 62.69 |
| HORVU2Hr1G083860.1 | Barley | cytosol | 14.18 | 20.1 |
| HORVU6Hr1G054100.2 | Barley | cytosol, nucleus | 15.09 | 19.71 |
| HORVU0Hr1G004970.2 | Barley | cytosol | 12.91 | 17.97 |
Protein Annotations
| Gene3D:1.25.40.570 | MapMan:19.2.3.3.1.1 | UniProt:A0A287PZC3 | InterPro:CSN1 | ncoils:Coil | GO:GO:0000338 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006464 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0008180 | GO:GO:0009987 | GO:GO:0019538 | EnsemblPlantsGene:HORVU4Hr1G086160 | EnsemblPlants:HORVU4Hr1G086160.1 |
| InterPro:IPR000717 | InterPro:PCI_dom | PFAM:PF01399 | PFAM:PF10602 | PFscan:PS50250 | PANTHER:PTHR14145 |
| PANTHER:PTHR14145:SF2 | InterPro:Rpn7/CSN1 | SMART:SM00088 | SMART:SM00753 | SUPFAM:SSF46785 | UniParc:UPI000B47B6CF |
| InterPro:WH_DNA-bd_sf | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chrchr4H:+:633377614..633386648
Molecular Weight (calculated)
61748.0 Da
IEP (calculated)
8.386
GRAVY (calculated)
-0.303
Length
550 amino acids
Sequence
(BLAST)
(BLAST)
001: MPPAHHNIHI RVHVHFGHTN CWANAHDPEK EALFVRAQVE SKTHTQPGPN ITLHICPHSP SISKPGPPSF PLLGISPLLS RSFRLPPLSR VLRRTPPPIP
101: VDSSMDVECE VSAAAAAAVT NGLGGGGQPS AAPVAAEQLD VEAYAAQYSG RTRVARLIFI SERCGVEAVE LEALRMAHDE ARAREDTTLY LEAVAKINGR
201: LAPRYRHDQA WVDSVNRRAE QRKEKLETEL NGYRTNLIKE SIRMGYNDIG DFFYGHGHLS EAFKSYIRTR DYCTTSKHIV QMCMHVILVS IELGQFAHVI
301: NYVSKAEQTP DTLDAVIVAK LRAAAGLANL ETKKYKLAAR KFLETGPELG SNYSEVIAPQ DVAVYGALCA LASFDRSELK SKVIDNINFR NFLELVPEVR
401: ELVNDFYASR YGSCLEHLEK LKPNLLLDIH LREHLETLYN DIRHKAIVQY TIPFISVDLN TMASAFKSSV SMLEKELAAL ITENKIQARI DSHNKILYAR
501: HADQRNATFQ RALQTGNEFE RDIKAMLLRA NIIKHDFTQK NWPGPRKMNL
101: VDSSMDVECE VSAAAAAAVT NGLGGGGQPS AAPVAAEQLD VEAYAAQYSG RTRVARLIFI SERCGVEAVE LEALRMAHDE ARAREDTTLY LEAVAKINGR
201: LAPRYRHDQA WVDSVNRRAE QRKEKLETEL NGYRTNLIKE SIRMGYNDIG DFFYGHGHLS EAFKSYIRTR DYCTTSKHIV QMCMHVILVS IELGQFAHVI
301: NYVSKAEQTP DTLDAVIVAK LRAAAGLANL ETKKYKLAAR KFLETGPELG SNYSEVIAPQ DVAVYGALCA LASFDRSELK SKVIDNINFR NFLELVPEVR
401: ELVNDFYASR YGSCLEHLEK LKPNLLLDIH LREHLETLYN DIRHKAIVQY TIPFISVDLN TMASAFKSSV SMLEKELAAL ITENKIQARI DSHNKILYAR
501: HADQRNATFQ RALQTGNEFE RDIKAMLLRA NIIKHDFTQK NWPGPRKMNL
001: MERDEEASGP MMEMCTNGGE ETSNRRPIIS GEPLDIEAYA ALYKGRTKIM RLLFIANHCG GNHALQFDAL RMAYDEIKKG ENTQLFREVV NKIGNRLGEK
101: YGMDLAWCEA VDRRAEQKKV KLENELSSYR TNLIKESIRM GYNDFGDFYY ACGMLGDAFK NYIRTRDYCT TTKHIIHMCM NAILVSIEMG QFTHVTSYVN
201: KAEQNPETLE PMVNAKLRCA SGLAHLELKK YKLAARKFLD VNPELGNSYN EVIAPQDIAT YGGLCALASF DRSELKQKVI DNINFRNFLE LVPDVRELIN
301: DFYSSRYASC LEYLASLKSN LLLDIHLHDH VDTLYDQIRK KALIQYTLPF VSVDLSRMAD AFKTSVSGLE KELEALITDN QIQARIDSHN KILYARHADQ
401: RNATFQKVLQ MGNEFDRDVR AMLLRANLLK HEYHARSARK L
101: YGMDLAWCEA VDRRAEQKKV KLENELSSYR TNLIKESIRM GYNDFGDFYY ACGMLGDAFK NYIRTRDYCT TTKHIIHMCM NAILVSIEMG QFTHVTSYVN
201: KAEQNPETLE PMVNAKLRCA SGLAHLELKK YKLAARKFLD VNPELGNSYN EVIAPQDIAT YGGLCALASF DRSELKQKVI DNINFRNFLE LVPDVRELIN
301: DFYSSRYASC LEYLASLKSN LLLDIHLHDH VDTLYDQIRK KALIQYTLPF VSVDLSRMAD AFKTSVSGLE KELEALITDN QIQARIDSHN KILYARHADQ
401: RNATFQKVLQ MGNEFDRDVR AMLLRANLLK HEYHARSARK L
Arabidopsis Description
CSN1SK31 [Source:UniProtKB/TrEMBL;Acc:A0A178VFN7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.