Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH48239 | Soybean | cytosol | 96.85 | 96.41 |
| Solyc01g091650.2.1 | Tomato | cytosol | 82.43 | 83.18 |
| PGSC0003DMT400071374 | Potato | cytosol | 82.21 | 82.95 |
| VIT_15s0048g01980.t01 | Wine grape | cytosol | 80.41 | 80.95 |
| AT3G61140.1 | Thale cress | cytosol | 77.48 | 78.0 |
| HORVU0Hr1G029090.1 | Barley | endoplasmic reticulum | 19.14 | 75.89 |
| CDY45683 | Canola | cytosol | 76.35 | 74.83 |
| CDY52333 | Canola | cytosol | 74.77 | 74.77 |
| Bra007576.1-P | Field mustard | cytosol | 73.42 | 74.77 |
| CDY65304 | Canola | cytosol | 74.32 | 74.49 |
| CDX67853 | Canola | cytosol | 75.9 | 74.39 |
| Bra003438.1-P | Field mustard | cytosol | 75.68 | 74.17 |
| GSMUA_Achr11P... | Banana | cytosol | 72.97 | 71.68 |
| Os03t0116500-01 | Rice | cytosol | 71.17 | 71.66 |
| GSMUA_Achr11P... | Banana | cytosol | 71.62 | 70.67 |
| EER92981 | Sorghum | cytosol | 70.27 | 70.43 |
| GSMUA_Achr8P11930_001 | Banana | cytosol | 71.85 | 70.26 |
| TraesCS4B01G356500.1 | Wheat | cytosol | 70.72 | 70.25 |
| TraesCS4D01G350200.1 | Wheat | cytosol, golgi | 70.5 | 70.18 |
| TraesCS5A01G525900.1 | Wheat | cytosol, unclear | 70.27 | 69.96 |
| TraesCS1D01G187600.1 | Wheat | cytosol | 59.91 | 69.45 |
| Zm00001d027359_P001 | Maize | cytosol, extracellular | 68.92 | 68.76 |
| TraesCS1A01G188800.1 | Wheat | cytosol | 66.22 | 67.43 |
| TraesCS1B01G196500.2 | Wheat | cytosol | 66.67 | 65.92 |
| HORVU1Hr1G048620.1 | Barley | plastid | 65.99 | 60.16 |
| Zm00001d048502_P002 | Maize | cytosol | 22.3 | 57.89 |
| HORVU6Hr1G027500.11 | Barley | plastid | 36.71 | 57.39 |
| HORVU4Hr1G086160.1 | Barley | cytosol | 68.02 | 54.91 |
| TraesCS5D01G238500.1 | Wheat | cytosol | 34.46 | 45.95 |
| TraesCS7B01G257700.1 | Wheat | plastid | 41.22 | 26.79 |
| KRH57190 | Soybean | cytosol | 16.22 | 18.75 |
| KRH03906 | Soybean | nucleus | 15.99 | 18.39 |
| KRH57185 | Soybean | cytosol | 15.32 | 17.62 |
| KRH04710 | Soybean | extracellular | 8.33 | 16.3 |
Protein Annotations
| Gene3D:1.25.40.570 | EntrezGene:100782579 | MapMan:19.2.3.3.1.1 | EMBL:ACUP02001315 | InterPro:CSN1 | ncoils:Coil |
| EnsemblPlantsGene:GLYMA_03G016800 | GO:GO:0000338 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008180 | GO:GO:0009987 | GO:GO:0019538 |
| UniProt:I1JKE3 | InterPro:IPR000717 | EnsemblPlants:KRH65148 | ProteinID:KRH65148 | ProteinID:KRH65148.1 | InterPro:PCI_dom |
| PFAM:PF01399 | PFAM:PF10602 | PFscan:PS50250 | PANTHER:PTHR14145 | PANTHER:PTHR14145:SF2 | InterPro:Rpn7/CSN1 |
| SMART:SM00088 | SMART:SM00753 | SUPFAM:SSF46785 | UniParc:UPI000233A625 | InterPro:WH_DNA-bd_sf | SEG:seg |
Description
hypothetical protein
Coordinates
chr3:-:1690819..1696572
Molecular Weight (calculated)
50389.1 Da
IEP (calculated)
6.455
GRAVY (calculated)
-0.402
Length
444 amino acids
Sequence
(BLAST)
(BLAST)
001: MDGDDETSGP MIDEIYANGG GDDGDKRSRR AIMSGDQVDI EAYAALYSGR TKIMRLLFIA DKMNNAASQL EALRMAYDEI KKGENTQLFR EVVQKIDGRL
101: GPNYGMDAAW CDAIDRRAEQ KKEKLENELN AYRTNLIKES IRMGYNDFGE FYYAHGQLGD AFKSYVRTRD YCTTSKHIVH MCMSAILVSI EMGQFPHVTS
201: YVSKAEQSPD ALEAVTVAKL RCAAGLANLE AKKYKLAARK FLETGPELGS HYNDVIAPQD VATYGGLCAL ATFDRAELKS KVIDNSNFRN FLELVPEVRE
301: LINDFYSSHY ASCLEYLGNL KANLLLDIHL HDHVETLYDQ IRHKALIQYT LPFVSVDLNM MANAFKTTVA GLEKELEALI TDNQIQARID SHNKILYARH
401: ADQRNATFQR VLETGREFDR DVRSMLLRSN LIKHEFNLRA LRKL
101: GPNYGMDAAW CDAIDRRAEQ KKEKLENELN AYRTNLIKES IRMGYNDFGE FYYAHGQLGD AFKSYVRTRD YCTTSKHIVH MCMSAILVSI EMGQFPHVTS
201: YVSKAEQSPD ALEAVTVAKL RCAAGLANLE AKKYKLAARK FLETGPELGS HYNDVIAPQD VATYGGLCAL ATFDRAELKS KVIDNSNFRN FLELVPEVRE
301: LINDFYSSHY ASCLEYLGNL KANLLLDIHL HDHVETLYDQ IRHKALIQYT LPFVSVDLNM MANAFKTTVA GLEKELEALI TDNQIQARID SHNKILYARH
401: ADQRNATFQR VLETGREFDR DVRSMLLRSN LIKHEFNLRA LRKL
001: MERDEEASGP MMEMCTNGGE ETSNRRPIIS GEPLDIEAYA ALYKGRTKIM RLLFIANHCG GNHALQFDAL RMAYDEIKKG ENTQLFREVV NKIGNRLGEK
101: YGMDLAWCEA VDRRAEQKKV KLENELSSYR TNLIKESIRM GYNDFGDFYY ACGMLGDAFK NYIRTRDYCT TTKHIIHMCM NAILVSIEMG QFTHVTSYVN
201: KAEQNPETLE PMVNAKLRCA SGLAHLELKK YKLAARKFLD VNPELGNSYN EVIAPQDIAT YGGLCALASF DRSELKQKVI DNINFRNFLE LVPDVRELIN
301: DFYSSRYASC LEYLASLKSN LLLDIHLHDH VDTLYDQIRK KALIQYTLPF VSVDLSRMAD AFKTSVSGLE KELEALITDN QIQARIDSHN KILYARHADQ
401: RNATFQKVLQ MGNEFDRDVR AMLLRANLLK HEYHARSARK L
101: YGMDLAWCEA VDRRAEQKKV KLENELSSYR TNLIKESIRM GYNDFGDFYY ACGMLGDAFK NYIRTRDYCT TTKHIIHMCM NAILVSIEMG QFTHVTSYVN
201: KAEQNPETLE PMVNAKLRCA SGLAHLELKK YKLAARKFLD VNPELGNSYN EVIAPQDIAT YGGLCALASF DRSELKQKVI DNINFRNFLE LVPDVRELIN
301: DFYSSRYASC LEYLASLKSN LLLDIHLHDH VDTLYDQIRK KALIQYTLPF VSVDLSRMAD AFKTSVSGLE KELEALITDN QIQARIDSHN KILYARHADQ
401: RNATFQKVLQ MGNEFDRDVR AMLLRANLLK HEYHARSARK L
Arabidopsis Description
CSN1SK31 [Source:UniProtKB/TrEMBL;Acc:A0A178VFN7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.