CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG94317
KRG99095
KRH23810
KRH39972
KRH45896
KRH48239
KRH57651
KRH65148
KRH70713

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G26990.1	KRG99095	AT1G26830.1	12615944
AT2G26990.1	KRH45896	AT1G26830.1	12615944
AT2G26990.1	KRH70713	AT1G26830.1	12615944
AT2G26990.1	KRH48239	AT3G61140.1	11854419
AT2G26990.1	KRH65148	AT3G61140.1	11854419
AT2G26990.1	KRH48239	AT3G61140.1	12615944
AT2G26990.1	KRH65148	AT3G61140.1	12615944
AT2G26990.1	KRG94317	AT5G14250.1	12615944
AT2G26990.1	KRH57651	AT5G14250.1	12615944
AT2G26990.1	KRH23810	AT5G42970.1	12615944
AT2G26990.1	KRH39972	AT5G42970.1	12615944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG94272	Soybean	nucleus	97.04	97.04
KRH64921	Soybean	nucleus	96.13	96.13
GSMUA_Achr6P23660_001	Banana	cytosol	91.12	92.38
KRG94968	Soybean	cytosol	94.53	92.22
VIT_08s0040g00430.t01	Wine grape	cytosol	92.03	91.82
Os01t0279200-02	Rice	plasma membrane	89.07	89.07
Solyc11g062430.1.1	Tomato	cytosol	89.07	89.07
PGSC0003DMT400082384	Potato	cytosol	88.84	88.84
TraesCS3D01G194400.1	Wheat	nucleus	88.84	88.84
HORVU3Hr1G039980.8	Barley	nucleus	88.84	88.84
TraesCS3A01G191800.1	Wheat	golgi, unclear	88.84	88.84
PGSC0003DMT400072227	Potato	nucleus	88.61	88.61
Solyc01g008840.2.1	Tomato	cytosol	88.61	88.61
TraesCS3B01G219800.1	Wheat	cytosol	88.61	88.61
EES02774	Sorghum	cytosol	88.38	88.38
Solyc10g081150.1.1	Tomato	nucleus	88.15	88.15
Zm00001d040462_P001	Maize	cytosol, nucleus, peroxisome	88.38	86.22
CDY38538	Canola	cytosol	84.28	84.28
AT2G26990.1	Thale cress	cytosol	84.28	84.28
Bra000529.1-P	Field mustard	cytosol	84.05	84.05
CDX71478	Canola	cytosol	84.05	84.05
CDX83249	Canola	cytosol	83.83	84.02
CDY04472	Canola	cytosol	83.83	83.83
Zm00001d008233_P001	Maize	cytosol, nucleus, peroxisome	87.93	83.19
PGSC0003DMT400058484	Potato	cytosol	88.38	81.17
Bra012038.1-P	Field mustard	nucleus	82.69	42.51
KRH04812	Soybean	nucleus	19.36	20.19
KRH61975	Soybean	cytosol, nucleus, plastid	18.91	19.67
KRH52636	Soybean	endoplasmic reticulum	18.68	19.43
KRH16194	Soybean	cytosol	17.77	19.07

Protein Annotations

Gene3D:1.25.40.570	EntrezGene:100818784	MapMan:19.2.3.3.1.2	EMBL:ACUP02002883	EnsemblPlantsGene:GLYMA_05G079400	GO:GO:0000338
GO:GO:0003674	GO:GO:0003714	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0008180	GO:GO:0009058
GO:GO:0009987	GO:GO:0019538	GO:GO:0045892	UniProt:I1K1W8	InterPro:IPR000717	EnsemblPlants:KRH57710
ProteinID:KRH57710	ProteinID:KRH57710.1	InterPro:PCI_dom	PFAM:PF01399	PFscan:PS50250	PANTHER:PTHR10678
PANTHER:PTHR10678:SF3	SMART:SM00088	SMART:SM00753	SUPFAM:SSF46785	UniParc:UPI0001BA76F3	InterPro:WH_DNA-bd_sf
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr5:+:10939793..10945129

Molecular Weight (calculated)

51503.9 Da

IEP (calculated)

6.427

GRAVY (calculated)

-0.616

Length

439 amino acids

Sequence
(BLAST)

001: MASDADMEDY GFEYSDEEEV EQDVDIENQY YNSKGMVESD PEGALAGFAQ VVQMEQEKAE WGFKALKQTV KLYYRLGRYK EMMEAYREML TYIKSAVTRN
101: YSEKCINSIM DYVSGSASQN FGLLQEFYQT TLRSLEDAKN ERLWFKTNLK LCKIYFDIGE YGRMNKILKE LHKSCQKEDG TDDHKKGTQL LEVYAVEIQM
201: YTETKNNKKL KQLYQKALTI KSAIPHPRIM GIIHECGGKM HMAERQWAEA ATDFFEAFKN YDEAGSQRRI QCLKYLVLAN MLMESEVNPF DGQEAKPYKN
301: DPEILVMTNL IAAYQRNEIL EFEKILKSNR RTIMDDPFIR NYIEDLLKNI RTQVLLKLIK PYTRIRIPFI SKELNVPEHD VEQLLVSLIL DNRIQGHIDQ
401: VNRLLERADR SKGMKKYTAV DKWNTQLKSL YQTINNRVC

Best Arabidopsis Sequence Match ( AT2G26990.1 )
(BLAST)

001: MASDADMEDY GFEYSDEEQE EQDVDIENQY YNSKGMVETE PEEALSGFAE VVQMEPEKAD WGFKALKQTV KIYYRLGKYK EMMEAYTEML TYIKSAVTRN
101: YSEKCINNIM DFVSGSASQN TGLLQEFYQT TLKALEEAKN ERLWFKTNLK LCNIWFDIGE YRRMTKILKE LHKSCQKEDG TDDQKKGSQL LEVYAIEIQI
201: YTETKDNKKL KQLYHKALAI KSAIPHPRIM GIIRECGGKM HMAERQWEEA ATDFFEAFKN YDEAGNQRRI QCLKYLVLAN MLMESEVNPF DGQEAKPYKN
301: DPEILAMTNL IAAYQRNEII EFERILKSNR RTIMDDPFIR NYMEDLLKKV RTQVLLKLIK PYTKIGIPFI SKELNVPETD VTELLVSLIL DSRIDGHIDE
401: MNRYLLRGDS GNGRKLHKAV DKWNSQLKSL SSNITSRVC

Arabidopsis Description

CSN2COP9 signalosome complex subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:Q8W207]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.