Factsheet for Solyc11g062430.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g010820.2.1
Solyc01g091650.2.1
Solyc02g093920.2.1
Solyc04g080160.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G26990.1	Solyc01g010820.2.1	AT1G26830.1	12615944
AT2G26990.1	Solyc01g091650.2.1	AT3G61140.1	11854419
AT2G26990.1	Solyc01g091650.2.1	AT3G61140.1	12615944
AT2G26990.1	Solyc02g093920.2.1	AT5G14250.1	12615944
AT2G26990.1	Solyc04g080160.2.1	AT5G42970.1	12615944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400082384	Potato	cytosol	97.72	97.72
Solyc01g008840.2.1	Tomato	cytosol	92.94	92.94
VIT_08s0040g00430.t01	Wine grape	cytosol	91.34	91.14
TraesCS3D01G194400.1	Wheat	nucleus	91.12	91.12
TraesCS3A01G191800.1	Wheat	golgi, unclear	91.12	91.12
HORVU3Hr1G039980.8	Barley	nucleus	91.12	91.12
Os01t0279200-02	Rice	plasma membrane	91.12	91.12
TraesCS3B01G219800.1	Wheat	cytosol	90.89	90.89
KRH64921	Soybean	nucleus	90.66	90.66
EES02774	Sorghum	cytosol	89.98	89.98
KRH57710	Soybean	nucleus	89.07	89.07
Solyc10g081150.1.1	Tomato	nucleus	88.84	88.84
Zm00001d040462_P001	Maize	cytosol, nucleus, peroxisome	89.98	87.78
KRG94272	Soybean	nucleus	87.7	87.7
KRG94968	Soybean	cytosol	89.75	87.56
CDX71478	Canola	cytosol	85.65	85.65
CDY38538	Canola	cytosol	85.42	85.42
AT2G26990.1	Thale cress	cytosol	85.42	85.42
CDY04472	Canola	cytosol	85.19	85.19
Bra000529.1-P	Field mustard	cytosol	85.19	85.19
CDX83249	Canola	cytosol	84.97	85.16
Zm00001d008233_P001	Maize	cytosol, nucleus, peroxisome	89.52	84.7
GSMUA_Achr6P08520_001	Banana	cytosol	35.76	82.2
Bra012038.1-P	Field mustard	nucleus	84.28	43.33
Solyc05g013030.1.1	Tomato	plastid	18.45	19.15

Protein Annotations

Gene3D:1.25.40.570	MapMan:19.2.3.3.1.2	GO:GO:0000338	GO:GO:0003674	GO:GO:0003714	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0008180	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0045892
InterPro:IPR000717	UniProt:K4D954	InterPro:PCI_dom	PFAM:PF01399	PFscan:PS50250	PANTHER:PTHR10678
PANTHER:PTHR10678:SF3	SMART:SM00088	SMART:SM00753	SUPFAM:SSF46785	EnsemblPlantsGene:Solyc11g062430.1	EnsemblPlants:Solyc11g062430.1.1
UniParc:UPI0002769680	InterPro:WH_DNA-bd_sf	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr11:-:49471713..49478708

Molecular Weight (calculated)

51236.6 Da

IEP (calculated)

5.934

GRAVY (calculated)

-0.610

Length

439 amino acids

Sequence
(BLAST)

001: MGSDADMEDY GFEYSEEEPE EQDVDIENQY YNSKGLAETD PEAALEGFAE VVRMEPEKAD WGFKALKQTV KLYYKLGKYK GMMDAYREML TYIKSAVTRN
101: YSEKCINNIM DFVSGSASQN FDLLQEFYQT TLKALEEAKN ERLWFKTNLK LCKIWFDIGE YGRMNKILKE LHKSCQKEDG TDDQKKGTQL LEVYAIEIQM
201: YTETKNNKKL KELYTKALSV KSAIPHPRIM GIIRECGGKM HMAERQWAEA ATDFFEAFKN YDEAGNQRRI QCLKYLVLAN MLMESEVNPF DGQEAKPYKN
301: DPEILAMTNL IAAYQRNEIL EFEKILKSNR RTIMDDPFIR NYIEDLLRNV RTQVLLKIIK PYTRIRIPFI SKELNVPEKD VGELLVSLIL DNRINGHIDQ
401: VNRLLECGDR SKGMKKYAAI DKWNTQLRSL YRTVGNRVC

Best Arabidopsis Sequence Match ( AT2G26990.1 )
(BLAST)

001: MASDADMEDY GFEYSDEEQE EQDVDIENQY YNSKGMVETE PEEALSGFAE VVQMEPEKAD WGFKALKQTV KIYYRLGKYK EMMEAYTEML TYIKSAVTRN
101: YSEKCINNIM DFVSGSASQN TGLLQEFYQT TLKALEEAKN ERLWFKTNLK LCNIWFDIGE YRRMTKILKE LHKSCQKEDG TDDQKKGSQL LEVYAIEIQI
201: YTETKDNKKL KQLYHKALAI KSAIPHPRIM GIIRECGGKM HMAERQWEEA ATDFFEAFKN YDEAGNQRRI QCLKYLVLAN MLMESEVNPF DGQEAKPYKN
301: DPEILAMTNL IAAYQRNEII EFERILKSNR RTIMDDPFIR NYMEDLLKKV RTQVLLKLIK PYTKIGIPFI SKELNVPETD VTELLVSLIL DSRIDGHIDE
401: MNRYLLRGDS GNGRKLHKAV DKWNSQLKSL SSNITSRVC

Arabidopsis Description

CSN2COP9 signalosome complex subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:Q8W207]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.