Factsheet for Bra000529.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra003438.1-P
Bra006246.1-P
Bra006326.1-P
Bra007576.1-P
Bra016291.1-P
Bra023453.1-P
Bra024680.1-P
Bra033654.1-P
Bra035336.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G26990.1	Bra016291.1-P	AT1G26830.1	12615944
AT2G26990.1	Bra024680.1-P	AT1G26830.1	12615944
AT2G26990.1	Bra003438.1-P	AT3G61140.1	11854419
AT2G26990.1	Bra007576.1-P	AT3G61140.1	11854419
AT2G26990.1	Bra003438.1-P	AT3G61140.1	12615944
AT2G26990.1	Bra007576.1-P	AT3G61140.1	12615944
AT2G26990.1	Bra006246.1-P	AT5G14250.1	12615944
AT2G26990.1	Bra006326.1-P	AT5G14250.1	12615944
AT2G26990.1	Bra023453.1-P	AT5G14250.1	12615944
AT2G26990.1	Bra033654.1-P	AT5G42970.1	12615944
AT2G26990.1	Bra035336.1-P	AT5G42970.1	12615944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX83249	Canola	cytosol	98.63	98.86
AT2G26990.1	Thale cress	cytosol	93.39	93.39
GSMUA_Achr6P23660_001	Banana	cytosol	84.74	85.91
VIT_08s0040g00430.t01	Wine grape	cytosol	85.42	85.23
Solyc11g062430.1.1	Tomato	cytosol	85.19	85.19
KRH64921	Soybean	nucleus	85.19	85.19
PGSC0003DMT400082384	Potato	cytosol	84.74	84.74
KRH57710	Soybean	nucleus	84.05	84.05
KRG94272	Soybean	nucleus	83.37	83.37
EES02774	Sorghum	cytosol	83.37	83.37
HORVU3Hr1G039980.8	Barley	nucleus	83.14	83.14
Os01t0279200-02	Rice	plasma membrane	83.14	83.14
Solyc01g008840.2.1	Tomato	cytosol	83.14	83.14
TraesCS3D01G194400.1	Wheat	nucleus	83.14	83.14
TraesCS3A01G191800.1	Wheat	golgi, unclear	83.14	83.14
TraesCS3B01G219800.1	Wheat	cytosol	82.92	82.92
KRG94968	Soybean	cytosol	84.51	82.44
PGSC0003DMT400072227	Potato	nucleus	81.78	81.78
Solyc10g081150.1.1	Tomato	nucleus	81.55	81.55
Zm00001d040462_P001	Maize	cytosol, nucleus, peroxisome	83.14	81.11
Zm00001d008233_P001	Maize	cytosol, nucleus, peroxisome	82.92	78.45
PGSC0003DMT400058484	Potato	cytosol	82.92	76.15
Bra012038.1-P	Field mustard	nucleus	93.39	48.01
Bra010849.1-P	Field mustard	cytosol, nucleus, plastid	17.54	18.38
Bra032291.1-P	Field mustard	cytosol, nucleus, plastid	17.31	18.14

Protein Annotations

Gene3D:1.25.40.570	MapMan:19.2.3.3.1.2	EnsemblPlantsGene:Bra000529	EnsemblPlants:Bra000529.1	EnsemblPlants:Bra000529.1-P	GO:GO:0000338
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005829
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0008180	GO:GO:0009987	GO:GO:0019538
InterPro:IPR000717	UniProt:M4C8K1	InterPro:PCI_dom	PFAM:PF01399	PFscan:PS50250	PANTHER:PTHR10678
PANTHER:PTHR10678:SF3	SMART:SM00088	SMART:SM00753	SUPFAM:SSF46785	UniParc:UPI000254003C	InterPro:WH_DNA-bd_sf
SEG:seg	:	:	:	:	:

Description

AT2G26990 (E=2e-233) FUS12, ATCSN2, COP12, CSN2 | FUS12 (FUSCA 12)

Coordinates

chrA03:+:11600857..11602870

Molecular Weight (calculated)

51297.7 Da

IEP (calculated)

5.881

GRAVY (calculated)

-0.605

Length

439 amino acids

Sequence
(BLAST)

001: MASDADMEDY GFEYSDDEPE EQDVDIENQY YSAKGRVEAE PEDALSEFAM VVKMEPDKAE WGFKALKQTV KIYYRLGKYK EMMDAYREML TYIKSAVTRN
101: YSEKCINNIM DFVSGSASQN TGLLQEFYQT TLKALEEAKN ERLWFKTNLK LCNIWFDIGE YRRMTKILKE LHKSCQKEDG TDDQKKGSQL LEVYAIEIQI
201: YTETKDNKKL KQLYQKALAI KSAIPHPRIM GIIRECGGKM HMTERQWAEA ATDFFEAFKN YDEAGNQRRI QCLKYLVLAN MLMESEVNPF DGQEAKPYKN
301: DPEILAMTNL IAAYQRNEII EFEKILKNNR RTIMDDPFIR NYMEDLLKKV RTQVLLKLIK PYTKIKIPFI SKELNVPEND VTELLVSLIL DSRIDGHIDE
401: INRYLLRGDS ANGRKLHKAV DKWNTQLKSL SMSITNRVC

Best Arabidopsis Sequence Match ( AT2G26990.1 )
(BLAST)

001: MASDADMEDY GFEYSDEEQE EQDVDIENQY YNSKGMVETE PEEALSGFAE VVQMEPEKAD WGFKALKQTV KIYYRLGKYK EMMEAYTEML TYIKSAVTRN
101: YSEKCINNIM DFVSGSASQN TGLLQEFYQT TLKALEEAKN ERLWFKTNLK LCNIWFDIGE YRRMTKILKE LHKSCQKEDG TDDQKKGSQL LEVYAIEIQI
201: YTETKDNKKL KQLYHKALAI KSAIPHPRIM GIIRECGGKM HMAERQWEEA ATDFFEAFKN YDEAGNQRRI QCLKYLVLAN MLMESEVNPF DGQEAKPYKN
301: DPEILAMTNL IAAYQRNEII EFERILKSNR RTIMDDPFIR NYMEDLLKKV RTQVLLKLIK PYTKIGIPFI SKELNVPETD VTELLVSLIL DSRIDGHIDE
401: MNRYLLRGDS GNGRKLHKAV DKWNSQLKSL SSNITSRVC

Arabidopsis Description

CSN2COP9 signalosome complex subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:Q8W207]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.