Factsheet for GSMUA_Achr6P23660_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr7P18000_001
GSMUA_Achr8P11930_001
GSMUA_Achr8P16990_001
GSMUA_Achr8P31220_001
GSMUA_Achr9P19410_001
GSMUA_AchrUn_...
GSMUA_AchrUn_...
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G26990.1	GSMUA_Achr7P18000_001	AT1G26830.1	12615944
AT2G26990.1	GSMUA_Achr8P16990_001	AT1G26830.1	12615944
AT2G26990.1	GSMUA_AchrUn_...	AT1G26830.1	12615944
AT2G26990.1	GSMUA_AchrUn_...	AT1G26830.1	12615944
AT2G26990.1	GSMUA_Achr11P...	AT3G61140.1	11854419
AT2G26990.1	GSMUA_Achr11P...	AT3G61140.1	11854419
AT2G26990.1	GSMUA_Achr8P11930_001	AT3G61140.1	11854419
AT2G26990.1	GSMUA_Achr11P...	AT3G61140.1	12615944
AT2G26990.1	GSMUA_Achr11P...	AT3G61140.1	12615944
AT2G26990.1	GSMUA_Achr8P11930_001	AT3G61140.1	12615944
AT2G26990.1	GSMUA_Achr11P...	AT5G14250.1	12615944
AT2G26990.1	GSMUA_AchrUn_...	AT5G14250.1	12615944
AT2G26990.1	GSMUA_Achr8P31220_001	AT5G42970.1	12615944
AT2G26990.1	GSMUA_Achr9P19410_001	AT5G42970.1	12615944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_08s0040g00430.t01	Wine grape	cytosol	96.07	94.55
KRH64921	Soybean	nucleus	95.84	94.53
KRG94968	Soybean	cytosol	95.15	91.56
KRH57710	Soybean	nucleus	92.38	91.12
KRG94272	Soybean	nucleus	91.69	90.43
GSMUA_Achr6P08520_001	Banana	cytosol	38.57	87.43
CDX71478	Canola	cytosol	86.37	85.19
CDY38538	Canola	cytosol	86.37	85.19
AT2G26990.1	Thale cress	cytosol	86.14	84.97
CDX83249	Canola	cytosol	85.91	84.93
Bra000529.1-P	Field mustard	cytosol	85.91	84.74
CDY04472	Canola	cytosol	85.91	84.74
GSMUA_AchrUn_...	Banana	cytosol	28.64	74.25
Bra012038.1-P	Field mustard	nucleus	85.22	43.21
GSMUA_Achr9P29490_001	Banana	cytosol	20.55	22.53
GSMUA_Achr10P...	Banana	cytosol	20.55	21.09

Protein Annotations

Gene3D:1.25.40.570	MapMan:19.2.3.3.1.2	GO:GO:0000338	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005737	GO:GO:0005829	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0008180	GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSMUA_Achr6G23660_001	EnsemblPlants:GSMUA_Achr6P23660_001	EnsemblPlants:GSMUA_Achr6T23660_001
InterPro:IPR000717	UniProt:M0T9L4	InterPro:PCI_dom	PFAM:PF01399	PFscan:PS50250	PANTHER:PTHR10678
PANTHER:PTHR10678:SF3	SMART:SM00088	SMART:SM00753	SUPFAM:SSF46785	UniParc:UPI000296C397	InterPro:WH_DNA-bd_sf
SEG:seg	:	:	:	:	:

Description

COP9 signalosome complex subunit 2 [Source:GMGC_GENE;Acc:GSMUA_Achr6G23660_001]

Coordinates

chr6:+:23952740..23959836

Molecular Weight (calculated)

50835.1 Da

IEP (calculated)

6.408

GRAVY (calculated)

-0.621

Length

433 amino acids

Sequence
(BLAST)

001: MEDYGFEYSD EEPEEQDVDI ENQYYNSKGL VETDPEEALA GFAEVVRMEP EKAEWGFKAL KQTVKLYYRL GKYKEMMEAY REMLTYIKSA VTRNYSEKCI
101: NNIMDFVSGS ASQNFGLLQE FYETTLKALE EAKNERLWFK TNLKLCTIWF DIGEYGRMSK ILKELHKSCQ REDGTDDQKK GTQLLEVYAI EIQMYTQTKN
201: NKKLKQLYQK ALSIKSAIPH PRIMGIIHEC GGKMHMAERQ WAEAATDFFE AFKNYDEAGN QRRIQCLKYL VLANMLMESE VNPFDGQEAK PYKNDPEILA
301: MTNLIAAYQR NEILEFEKIL KSNRRTIMDD PFIRNYIEDL LKNIRTQVLL KLIKPYTRIR IPFISKELNV PEKDVEQLLV SLILDNRIQG HIDQVNKLLE
401: RSDRSKGMKK YAAIDKWNTQ LRSLYQTISN RVG

Best Arabidopsis Sequence Match ( AT2G26990.1 )
(BLAST)

001: MASDADMEDY GFEYSDEEQE EQDVDIENQY YNSKGMVETE PEEALSGFAE VVQMEPEKAD WGFKALKQTV KIYYRLGKYK EMMEAYTEML TYIKSAVTRN
101: YSEKCINNIM DFVSGSASQN TGLLQEFYQT TLKALEEAKN ERLWFKTNLK LCNIWFDIGE YRRMTKILKE LHKSCQKEDG TDDQKKGSQL LEVYAIEIQI
201: YTETKDNKKL KQLYHKALAI KSAIPHPRIM GIIRECGGKM HMAERQWEEA ATDFFEAFKN YDEAGNQRRI QCLKYLVLAN MLMESEVNPF DGQEAKPYKN
301: DPEILAMTNL IAAYQRNEII EFERILKSNR RTIMDDPFIR NYMEDLLKKV RTQVLLKLIK PYTKIGIPFI SKELNVPETD VTELLVSLIL DSRIDGHIDE
401: MNRYLLRGDS GNGRKLHKAV DKWNSQLKSL SSNITSRVC

Arabidopsis Description

CSN2COP9 signalosome complex subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:Q8W207]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.