Factsheet for GSMUA_Achr6P08520_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
nucleus 2
cytosol 3
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	plastid
EpiLoc:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P23660_001	Banana	cytosol	87.43	38.57
Solyc10g081150.1.1	Tomato	nucleus	82.72	35.99
PGSC0003DMT400072227	Potato	nucleus	82.2	35.76
PGSC0003DMT400082384	Potato	cytosol	82.2	35.76
Solyc11g062430.1.1	Tomato	cytosol	82.2	35.76
Os01t0279200-02	Rice	plasma membrane	81.68	35.54
Solyc01g008840.2.1	Tomato	cytosol	81.68	35.54
EES02774	Sorghum	cytosol	81.15	35.31
TraesCS3D01G194400.1	Wheat	nucleus	81.15	35.31
TraesCS3B01G219800.1	Wheat	cytosol	81.15	35.31
HORVU3Hr1G039980.8	Barley	nucleus	81.15	35.31
TraesCS3A01G191800.1	Wheat	golgi, unclear	81.15	35.31
Zm00001d040462_P001	Maize	cytosol, nucleus, peroxisome	81.15	34.44
Zm00001d008233_P001	Maize	cytosol, nucleus, peroxisome	80.63	33.19
PGSC0003DMT400058484	Potato	cytosol	81.68	32.64
GSMUA_Achr9P29490_001	Banana	cytosol	22.51	10.89
GSMUA_Achr10P...	Banana	cytosol	21.47	9.72
GSMUA_AchrUn_...	Banana	cytosol	4.71	5.39

Protein Annotations

EnsemblPlants:GSMUA_Achr6P08520_001	EnsemblPlants:GSMUA_Achr6T08520_001	EnsemblPlantsGene:GSMUA_Achr6G08520_001	Gene3D:1.25.40.570	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0008180	InterPro:IPR000717	InterPro:PCI_dom	InterPro:WH_DNA-bd_sf
PANTHER:PTHR10678	PANTHER:PTHR10678:SF3	PFAM:PF01399	PFscan:PS50250	SMART:SM00088	SMART:SM00753
SUPFAM:SSF46785	UniParc:UPI0002960DC8	UniProt:M0T5A1	MapMan:35.1	:	:

Description

COP9 signalosome complex subunit 2 [Source:GMGC_GENE;Acc:GSMUA_Achr6G08520_001]

Coordinates

chr6:-:5666951..5668902

Molecular Weight (calculated)

22538.7 Da

IEP (calculated)

9.074

GRAVY (calculated)

-0.309

Length

191 amino acids

Sequence
(BLAST)

001: MIRLSFINFM KIQDEAGNQR CIQCLKYLVL ANMLMESEVN PFDGQEAKPY KNDPEVLPMA NLIAAYQRNE ILEFEKILKS NRQTIMDDPF IRNYIEDLLK
101: NIRTQVLFKL IKLYTRIRIP FISKELNVPE KDVEQLLVSL ILDNCIQGHI DQVNRLLERS DRSKGLKKYT AIDKWNTQLR LLYQTISNRV S

Best Arabidopsis Sequence Match ( AT2G26990.1 )
(BLAST)

001: MASDADMEDY GFEYSDEEQE EQDVDIENQY YNSKGMVETE PEEALSGFAE VVQMEPEKAD WGFKALKQTV KIYYRLGKYK EMMEAYTEML TYIKSAVTRN
101: YSEKCINNIM DFVSGSASQN TGLLQEFYQT TLKALEEAKN ERLWFKTNLK LCNIWFDIGE YRRMTKILKE LHKSCQKEDG TDDQKKGSQL LEVYAIEIQI
201: YTETKDNKKL KQLYHKALAI KSAIPHPRIM GIIRECGGKM HMAERQWEEA ATDFFEAFKN YDEAGNQRRI QCLKYLVLAN MLMESEVNPF DGQEAKPYKN
301: DPEILAMTNL IAAYQRNEII EFERILKSNR RTIMDDPFIR NYMEDLLKKV RTQVLLKLIK PYTKIGIPFI SKELNVPETD VTELLVSLIL DSRIDGHIDE
401: MNRYLLRGDS GNGRKLHKAV DKWNSQLKSL SSNITSRVC

Arabidopsis Description

CSN2COP9 signalosome complex subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:Q8W207]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.