Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc01g008840.2.1 | Tomato | cytosol | 91.21 | 99.32 |
| PGSC0003DMT400082384 | Potato | cytosol | 84.73 | 92.26 |
| TraesCS3D01G194400.1 | Wheat | nucleus | 83.05 | 90.43 |
| TraesCS3A01G191800.1 | Wheat | golgi, unclear | 83.05 | 90.43 |
| HORVU3Hr1G039980.8 | Barley | nucleus | 83.05 | 90.43 |
| TraesCS3B01G219800.1 | Wheat | cytosol | 82.85 | 90.2 |
| KRH64921 | Soybean | nucleus | 82.85 | 90.2 |
| Os01t0279200-02 | Rice | plasma membrane | 82.85 | 90.2 |
| VIT_08s0040g00430.t01 | Wine grape | cytosol | 82.22 | 89.32 |
| EES02774 | Sorghum | cytosol | 81.8 | 89.07 |
| PGSC0003DMT400072227 | Potato | nucleus | 81.8 | 89.07 |
| KRG94272 | Soybean | nucleus | 81.17 | 88.38 |
| KRH57710 | Soybean | nucleus | 81.17 | 88.38 |
| KRG94968 | Soybean | cytosol | 82.43 | 87.56 |
| Zm00001d040462_P001 | Maize | cytosol, nucleus, peroxisome | 81.38 | 86.44 |
| Zm00001d008233_P001 | Maize | cytosol, nucleus, peroxisome | 81.38 | 83.84 |
| CDY38538 | Canola | cytosol | 76.78 | 83.6 |
| AT2G26990.1 | Thale cress | cytosol | 76.57 | 83.37 |
| CDY04472 | Canola | cytosol | 76.36 | 83.14 |
| CDX71478 | Canola | cytosol | 76.36 | 83.14 |
| Bra000529.1-P | Field mustard | cytosol | 76.15 | 82.92 |
| CDX83249 | Canola | cytosol | 75.94 | 82.88 |
| GSMUA_Achr6P08520_001 | Banana | cytosol | 32.64 | 81.68 |
| Bra012038.1-P | Field mustard | nucleus | 75.94 | 42.51 |
| PGSC0003DMT400072856 | Potato | plastid | 17.36 | 19.62 |
Protein Annotations
| Gene3D:1.25.40.570 | EntrezGene:102578848 | MapMan:19.2.3.3.1.2 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0008180 | InterPro:IPR000717 | UniProt:M1C2R1 | InterPro:PCI_dom | PFAM:PF01399 |
| EnsemblPlantsGene:PGSC0003DMG400022712 | PGSC:PGSC0003DMG400022712 | EnsemblPlants:PGSC0003DMT400058484 | PFscan:PS50250 | PANTHER:PTHR10678 | PANTHER:PTHR10678:SF3 |
| SMART:SM00088 | SMART:SM00753 | SUPFAM:SSF46785 | UniParc:UPI0002952BE3 | InterPro:WH_DNA-bd_sf | SEG:seg |
Description
Cop9 signalosome complex subunit [Source:PGSC_GENE;Acc:PGSC0003DMG400022712]
Coordinates
chr1:+:5138650..5146340
Molecular Weight (calculated)
55696.1 Da
IEP (calculated)
6.432
GRAVY (calculated)
-0.547
Length
478 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSDADMEDY GFEYSDEEQE EQDVDIENQY YNSKGMVETD PKGALEGFAE VVHMEPEKAE WGFKALKQTV KLYYKLGKFK EMMDSYREML TYIKSAVTRN
101: YSEKCINGIM DFVSGSASQN FGLLQEFYQT TLKALEEAKN ERLWFKTNLK LCKIWFDMGE YGRMSKILKE LHKSCKKEDG TDDEKKGTQL LEVYAIEIQM
201: YTETKNNKKL KELYNKALSV KSAIPHPRIM GIIRECGGKM HMAERKWAEA ATDFFEAFKN YDEAGNHRRI QCLNVPHVPL DVGFVKYDAV RLEGSSTRCR
301: FLVQPVYAPL VMWYLVLANM LMESEVNPFD GQEAKPYKND PEILAMTNLI AAYQRNEILE FEKIIKSNRR TIMDDPFIRN YIEDLLRKVR TQVLLKLIKP
401: YTRIRIPFIS KELNVPEKDV EDLLVSLILD NRIDGHIDQV NGLLECRDRS KGMKKYTAID KWNTQLRSLY QTVGNKVS
101: YSEKCINGIM DFVSGSASQN FGLLQEFYQT TLKALEEAKN ERLWFKTNLK LCKIWFDMGE YGRMSKILKE LHKSCKKEDG TDDEKKGTQL LEVYAIEIQM
201: YTETKNNKKL KELYNKALSV KSAIPHPRIM GIIRECGGKM HMAERKWAEA ATDFFEAFKN YDEAGNHRRI QCLNVPHVPL DVGFVKYDAV RLEGSSTRCR
301: FLVQPVYAPL VMWYLVLANM LMESEVNPFD GQEAKPYKND PEILAMTNLI AAYQRNEILE FEKIIKSNRR TIMDDPFIRN YIEDLLRKVR TQVLLKLIKP
401: YTRIRIPFIS KELNVPEKDV EDLLVSLILD NRIDGHIDQV NGLLECRDRS KGMKKYTAID KWNTQLRSLY QTVGNKVS
001: MASDADMEDY GFEYSDEEQE EQDVDIENQY YNSKGMVETE PEEALSGFAE VVQMEPEKAD WGFKALKQTV KIYYRLGKYK EMMEAYTEML TYIKSAVTRN
101: YSEKCINNIM DFVSGSASQN TGLLQEFYQT TLKALEEAKN ERLWFKTNLK LCNIWFDIGE YRRMTKILKE LHKSCQKEDG TDDQKKGSQL LEVYAIEIQI
201: YTETKDNKKL KQLYHKALAI KSAIPHPRIM GIIRECGGKM HMAERQWEEA ATDFFEAFKN YDEAGNQRRI QCLKYLVLAN MLMESEVNPF DGQEAKPYKN
301: DPEILAMTNL IAAYQRNEII EFERILKSNR RTIMDDPFIR NYMEDLLKKV RTQVLLKLIK PYTKIGIPFI SKELNVPETD VTELLVSLIL DSRIDGHIDE
401: MNRYLLRGDS GNGRKLHKAV DKWNSQLKSL SSNITSRVC
101: YSEKCINNIM DFVSGSASQN TGLLQEFYQT TLKALEEAKN ERLWFKTNLK LCNIWFDIGE YRRMTKILKE LHKSCQKEDG TDDQKKGSQL LEVYAIEIQI
201: YTETKDNKKL KQLYHKALAI KSAIPHPRIM GIIRECGGKM HMAERQWEEA ATDFFEAFKN YDEAGNQRRI QCLKYLVLAN MLMESEVNPF DGQEAKPYKN
301: DPEILAMTNL IAAYQRNEII EFERILKSNR RTIMDDPFIR NYMEDLLKKV RTQVLLKLIK PYTKIGIPFI SKELNVPETD VTELLVSLIL DSRIDGHIDE
401: MNRYLLRGDS GNGRKLHKAV DKWNSQLKSL SSNITSRVC
Arabidopsis Description
CSN2COP9 signalosome complex subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:Q8W207]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.