Factsheet for Solyc01g008840.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g010820.2.1
Solyc01g091650.2.1
Solyc02g093920.2.1
Solyc04g080160.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G26990.1	Solyc01g010820.2.1	AT1G26830.1	12615944
AT2G26990.1	Solyc01g091650.2.1	AT3G61140.1	11854419
AT2G26990.1	Solyc01g091650.2.1	AT3G61140.1	12615944
AT2G26990.1	Solyc02g093920.2.1	AT5G14250.1	12615944
AT2G26990.1	Solyc04g080160.2.1	AT5G42970.1	12615944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g062430.1.1	Tomato	cytosol	92.94	92.94
PGSC0003DMT400058484	Potato	cytosol	99.32	91.21
TraesCS3D01G194400.1	Wheat	nucleus	90.66	90.66
TraesCS3A01G191800.1	Wheat	golgi, unclear	90.66	90.66
HORVU3Hr1G039980.8	Barley	nucleus	90.66	90.66
Os01t0279200-02	Rice	plasma membrane	90.66	90.66
TraesCS3B01G219800.1	Wheat	cytosol	90.43	90.43
KRH64921	Soybean	nucleus	90.2	90.2
Solyc10g081150.1.1	Tomato	nucleus	89.75	89.75
EES02774	Sorghum	cytosol	89.52	89.52
VIT_08s0040g00430.t01	Wine grape	cytosol	89.52	89.32
KRH57710	Soybean	nucleus	88.61	88.61
KRG94272	Soybean	nucleus	88.15	88.15
KRG94968	Soybean	cytosol	89.75	87.56
Zm00001d040462_P001	Maize	cytosol, nucleus, peroxisome	88.84	86.67
Zm00001d008233_P001	Maize	cytosol, nucleus, peroxisome	89.07	84.27
CDY38538	Canola	cytosol	83.6	83.6
AT2G26990.1	Thale cress	cytosol	83.6	83.6
CDY04472	Canola	cytosol	83.37	83.37
CDX71478	Canola	cytosol	83.37	83.37
Bra000529.1-P	Field mustard	cytosol	83.14	83.14
CDX83249	Canola	cytosol	82.92	83.11
GSMUA_Achr6P08520_001	Banana	cytosol	35.54	81.68
Bra012038.1-P	Field mustard	nucleus	82.69	42.51
Solyc05g013030.1.1	Tomato	plastid	19.13	19.86

Protein Annotations

Gene3D:1.25.40.570	MapMan:19.2.3.3.1.2	GO:GO:0000338	GO:GO:0003674	GO:GO:0003714	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0008180	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0045892
InterPro:IPR000717	UniProt:K4AT80	InterPro:PCI_dom	PFAM:PF01399	PFscan:PS50250	PANTHER:PTHR10678
PANTHER:PTHR10678:SF3	SMART:SM00088	SMART:SM00753	SUPFAM:SSF46785	EnsemblPlantsGene:Solyc01g008840.2	EnsemblPlants:Solyc01g008840.2.1
UniParc:UPI000276331E	InterPro:WH_DNA-bd_sf	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr1:+:2864398..2872190

Molecular Weight (calculated)

51327.8 Da

IEP (calculated)

6.304

GRAVY (calculated)

-0.624

Length

439 amino acids

Sequence
(BLAST)

001: MGSDADMEDY GFEYSDEEQE EQDVDIENQY YNSKGMVETD PKGALEGFAE VVHMEPEKAE WGFKALKQTV KLYYKLGKFK EMMDSYREML TYIKSAVTRN
101: YSEKCINGIM DFVSGSASQN FSLLQEFYQT TLKALEEAKN ERLWFKTNLK LCKIWFDMGE YGRMSKILKE LHKSCKKEDG TDDEKKGTQL LEVYAIEIQM
201: YTETKNNKKL KELYNKALSV KSAIPHPRIM GIIRECGGKM HMAERKWAEA ATDFFEAFKN YDEAGNHRRI QCLKYLVLAN MLMESEVNPF DGQEAKPYKN
301: DPEILAMTNL IAAYQRNEIL EFEKIIKSNR RTIMDDPFIR NYIEDLLRKV RTQVLLKLIK PYTRIRIPFI SKELNVPEKD VEDLLVSLIL DNRIDGHIDQ
401: VNGLLECRDR SKGMKKYTAI DKWNTQLRSL YQTVGNKVC

Best Arabidopsis Sequence Match ( AT2G26990.1 )
(BLAST)

001: MASDADMEDY GFEYSDEEQE EQDVDIENQY YNSKGMVETE PEEALSGFAE VVQMEPEKAD WGFKALKQTV KIYYRLGKYK EMMEAYTEML TYIKSAVTRN
101: YSEKCINNIM DFVSGSASQN TGLLQEFYQT TLKALEEAKN ERLWFKTNLK LCNIWFDIGE YRRMTKILKE LHKSCQKEDG TDDQKKGSQL LEVYAIEIQI
201: YTETKDNKKL KQLYHKALAI KSAIPHPRIM GIIRECGGKM HMAERQWEEA ATDFFEAFKN YDEAGNQRRI QCLKYLVLAN MLMESEVNPF DGQEAKPYKN
301: DPEILAMTNL IAAYQRNEII EFERILKSNR RTIMDDPFIR NYMEDLLKKV RTQVLLKLIK PYTKIGIPFI SKELNVPETD VTELLVSLIL DSRIDGHIDE
401: MNRYLLRGDS GNGRKLHKAV DKWNSQLKSL SSNITSRVC

Arabidopsis Description

CSN2COP9 signalosome complex subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:Q8W207]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.