Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
TraesCS4D01G350200.1 | Wheat | cytosol, golgi | 99.55 | 99.78 |
TraesCS5A01G525900.1 | Wheat | cytosol, unclear | 98.21 | 98.43 |
HORVU0Hr1G029090.1 | Barley | endoplasmic reticulum | 23.04 | 91.96 |
Os03t0116500-01 | Rice | cytosol | 83.45 | 84.58 |
EER92981 | Sorghum | cytosol | 83.67 | 84.42 |
Zm00001d027359_P001 | Maize | cytosol, extracellular | 82.55 | 82.92 |
HORVU4Hr1G086160.1 | Barley | cytosol | 94.63 | 76.91 |
HORVU6Hr1G027500.11 | Barley | plastid | 46.31 | 72.89 |
TraesCS1B01G196500.2 | Wheat | cytosol | 72.93 | 72.61 |
KRH65148 | Soybean | cytosol | 70.25 | 70.72 |
Zm00001d048502_P002 | Maize | cytosol | 26.85 | 70.18 |
KRH48239 | Soybean | cytosol | 69.8 | 69.96 |
GSMUA_Achr11P... | Banana | cytosol | 69.8 | 69.33 |
VIT_15s0048g01980.t01 | Wine grape | cytosol | 68.23 | 69.16 |
PGSC0003DMT400071374 | Potato | cytosol | 68.01 | 69.09 |
GSMUA_Achr11P... | Banana | cytosol | 69.8 | 69.03 |
GSMUA_Achr8P11930_001 | Banana | cytosol | 70.02 | 68.94 |
Solyc01g091650.2.1 | Tomato | cytosol | 67.79 | 68.86 |
AT3G61140.1 | Thale cress | cytosol | 65.77 | 66.67 |
CDY52333 | Canola | cytosol | 65.77 | 66.22 |
Bra007576.1-P | Field mustard | cytosol | 64.21 | 65.83 |
CDY65304 | Canola | cytosol | 65.1 | 65.69 |
CDY45683 | Canola | cytosol | 66.0 | 65.12 |
CDX67853 | Canola | cytosol | 65.77 | 64.9 |
Bra003438.1-P | Field mustard | cytosol | 65.77 | 64.9 |
TraesCS7B01G257700.1 | Wheat | plastid | 47.43 | 31.04 |
TraesCS2B01G361900.1 | Wheat | golgi, plastid | 17.9 | 20.62 |
TraesCS6B01G242700.1 | Wheat | cytosol | 17.67 | 20.0 |
Protein Annotations
Gene3D:1.25.40.570 | MapMan:19.2.3.3.1.1 | InterPro:CSN1 | ncoils:Coil | GO:GO:0000338 | GO:GO:0005575 |
GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 |
GO:GO:0008180 | GO:GO:0009987 | GO:GO:0019538 | InterPro:IPR000717 | InterPro:PCI_dom | PFAM:PF01399 |
PFAM:PF10602 | PFscan:PS50250 | PANTHER:PTHR14145 | PANTHER:PTHR14145:SF2 | InterPro:Rpn7/CSN1 | SMART:SM00088 |
SMART:SM00753 | SUPFAM:SSF46785 | EnsemblPlantsGene:TraesCS4B01G356500 | EnsemblPlants:TraesCS4B01G356500.1 | InterPro:WH_DNA-bd_sf | SEG:seg |
Description
No Description!
Coordinates
chr4B:+:646968226..646972910
Molecular Weight (calculated)
50368.3 Da
IEP (calculated)
7.410
GRAVY (calculated)
-0.285
Length
447 amino acids
Sequence
(BLAST)
(BLAST)
001: MDVDCEVSAA AAAAVTNGLG GGEQAAAAPP VSADQLDVEA YAAQYSGRTR VARLLFIAER CGVEAIQLEA LRMAHDEARA REDTVLYLDA VLKINGRLGP
101: RYRHDQAWVD SVNRRAEQRK EKLETELNGY RTNLIKESIR MGYNDIGDFF YAHGHLSEAF KSYIRTRDYC TTSKHIVQMC MHVILVSIEL GQFAHVTNYV
201: SKAEQTPDTL DAVIVAKLRA AAGLANLETK KYKLAARKFL ETGPELGSNY SEVIAPQDVA VYGALCALAS FDRSELKSKV IDNINFRNFL ELVPEVRELV
301: NDFYASRYGS CLEHLEKLKP NLLLDIHLRE HLGTLYNDIR HKAIIQYTLP FISVDLNTMA SAFKSSVSML EKELAALITE NKIQARIDSH NKILYARHAD
401: QRNATFQRAL ETGNEFERDI KAMLLRANLI KHDFNQKNWP GQRKMNL
101: RYRHDQAWVD SVNRRAEQRK EKLETELNGY RTNLIKESIR MGYNDIGDFF YAHGHLSEAF KSYIRTRDYC TTSKHIVQMC MHVILVSIEL GQFAHVTNYV
201: SKAEQTPDTL DAVIVAKLRA AAGLANLETK KYKLAARKFL ETGPELGSNY SEVIAPQDVA VYGALCALAS FDRSELKSKV IDNINFRNFL ELVPEVRELV
301: NDFYASRYGS CLEHLEKLKP NLLLDIHLRE HLGTLYNDIR HKAIIQYTLP FISVDLNTMA SAFKSSVSML EKELAALITE NKIQARIDSH NKILYARHAD
401: QRNATFQRAL ETGNEFERDI KAMLLRANLI KHDFNQKNWP GQRKMNL
001: MERDEEASGP MMEMCTNGGE ETSNRRPIIS GEPLDIEAYA ALYKGRTKIM RLLFIANHCG GNHALQFDAL RMAYDEIKKG ENTQLFREVV NKIGNRLGEK
101: YGMDLAWCEA VDRRAEQKKV KLENELSSYR TNLIKESIRM GYNDFGDFYY ACGMLGDAFK NYIRTRDYCT TTKHIIHMCM NAILVSIEMG QFTHVTSYVN
201: KAEQNPETLE PMVNAKLRCA SGLAHLELKK YKLAARKFLD VNPELGNSYN EVIAPQDIAT YGGLCALASF DRSELKQKVI DNINFRNFLE LVPDVRELIN
301: DFYSSRYASC LEYLASLKSN LLLDIHLHDH VDTLYDQIRK KALIQYTLPF VSVDLSRMAD AFKTSVSGLE KELEALITDN QIQARIDSHN KILYARHADQ
401: RNATFQKVLQ MGNEFDRDVR AMLLRANLLK HEYHARSARK L
101: YGMDLAWCEA VDRRAEQKKV KLENELSSYR TNLIKESIRM GYNDFGDFYY ACGMLGDAFK NYIRTRDYCT TTKHIIHMCM NAILVSIEMG QFTHVTSYVN
201: KAEQNPETLE PMVNAKLRCA SGLAHLELKK YKLAARKFLD VNPELGNSYN EVIAPQDIAT YGGLCALASF DRSELKQKVI DNINFRNFLE LVPDVRELIN
301: DFYSSRYASC LEYLASLKSN LLLDIHLHDH VDTLYDQIRK KALIQYTLPF VSVDLSRMAD AFKTSVSGLE KELEALITDN QIQARIDSHN KILYARHADQ
401: RNATFQKVLQ MGNEFDRDVR AMLLRANLLK HEYHARSARK L
Arabidopsis Description
CSN1SK31 [Source:UniProtKB/TrEMBL;Acc:A0A178VFN7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.