Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G410800.1 | Wheat | cytosol | 96.75 | 96.23 |
| TraesCS5D01G416000.1 | Wheat | cytosol | 95.56 | 95.15 |
| HORVU5Hr1G098600.1 | Barley | cytosol | 93.17 | 92.77 |
| TraesCS5A01G220000.1 | Wheat | nucleus | 87.32 | 86.85 |
| Os07t0124500-01 | Rice | nucleus | 82.12 | 80.98 |
| KXG35906 | Sorghum | cytosol | 80.5 | 79.64 |
| Zm00001d002169_P006 | Maize | cytosol | 78.76 | 78.17 |
| Zm00001d002166_P004 | Maize | cytosol | 78.44 | 77.85 |
| Zm00001d020935_P002 | Maize | cytosol | 66.96 | 75.09 |
| Zm00001d002737_P002 | Maize | vacuole | 74.97 | 71.41 |
| GSMUA_Achr3P04920_001 | Banana | cytosol | 66.52 | 68.83 |
| VIT_16s0039g01140.t01 | Wine grape | cytosol | 6.07 | 67.47 |
| VIT_08s0007g07180.t01 | Wine grape | cytosol | 66.09 | 64.48 |
| CDY65406 | Canola | cytosol | 56.45 | 64.0 |
| CDY16358 | Canola | cytosol | 57.64 | 63.79 |
| CDX72169 | Canola | cytosol | 57.53 | 63.67 |
| KRH41811 | Soybean | cytosol | 63.49 | 63.28 |
| KRH68073 | Soybean | endoplasmic reticulum | 63.06 | 62.85 |
| KRH60516 | Soybean | endoplasmic reticulum | 62.95 | 62.81 |
| PGSC0003DMT400078176 | Potato | cytosol | 61.86 | 62.47 |
| Solyc06g076150.2.1 | Tomato | cytosol, nucleus, plastid | 61.11 | 62.39 |
| AT3G56150.1 | Thale cress | cytosol | 60.45 | 62.0 |
| PGSC0003DMT400046928 | Potato | cytosol | 61.65 | 61.71 |
| CDY27241 | Canola | cytosol | 57.96 | 61.71 |
| Bra022520.1-P | Field mustard | cytosol | 57.53 | 61.39 |
| Bra007220.1-P | Field mustard | cytosol | 59.37 | 61.23 |
| Solyc01g102570.2.1 | Tomato | cytosol, nucleus | 23.4 | 60.67 |
| Solyc01g102600.2.1 | Tomato | cytosol | 23.29 | 60.22 |
| Solyc01g102560.2.1 | Tomato | nucleus | 19.93 | 59.35 |
| CDY06037 | Canola | cytosol | 46.59 | 58.9 |
| Bra007396.1-P | Field mustard | cytosol, mitochondrion | 50.6 | 56.54 |
| CDX71953 | Canola | cytosol | 50.16 | 56.46 |
| Os02t0123300-00 | Rice | cytosol, mitochondrion, nucleus | 3.79 | 55.56 |
| AT3G22860.1 | Thale cress | cytosol | 47.56 | 54.53 |
| Solyc01g102590.2.1 | Tomato | nucleus | 22.43 | 50.49 |
Protein Annotations
| Gene3D:1.10.10.10 | MapMan:17.4.1.3.3 | ncoils:Coil | InterPro:EIF3C | InterPro:EIF3C_N_dom | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003743 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005852 | GO:GO:0006412 | GO:GO:0006413 |
| GO:GO:0008135 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 |
| GO:GO:0031369 | InterPro:IPR000717 | InterPro:IPR036388 | HAMAP:MF_03002 | InterPro:PCI_dom | PFAM:PF01399 |
| PFAM:PF05470 | PFscan:PS50250 | PANTHER:PTHR13937 | SMART:SM00088 | SMART:SM00753 | SUPFAM:SSF46785 |
| EnsemblPlantsGene:TraesCS5A01G406000 | EnsemblPlants:TraesCS5A01G406000.1 | InterPro:WH-like_DNA-bd_sf | InterPro:WH_DNA-bd_sf | SEG:seg | : |
Description
No Description!
Coordinates
chr5A:-:597660375..597663741
Molecular Weight (calculated)
104575.0 Da
IEP (calculated)
5.584
GRAVY (calculated)
-0.665
Length
923 amino acids
Sequence
(BLAST)
(BLAST)
001: MASRFWGQGD SDSEEEVDDI ESEQGSDSEK SEAGDGGRDV SKNRYLNSDD SDDSDTESHR VIRSLKDKRN DEMKATTDQM RNAMKINDCI SLQESFDKLN
101: KQLEKVVRVN ESTKIPNRYI TAIVLLEDFL AEALANKEAK VKMSSSNARA LVAVKQKLRK NNKQYEDLIQ KCRDNPESFE DDIADEKVLD DDSGDNGSDV
201: DIVDPEPDRD DSSDDNKGNL GGAWEKKLSK KDKIMDKQFL KDPSEITWDI VDKKLKEIVA SRGKKGTGRI ERVEQLTFLT RVAKTPAQKL EILFHVISAQ
301: FDVNPSLLGH MPINVWKKCV DNMLLVLDIL QQYPNIVVDT SVESDEKETQ KGADYDGTIH VTGDLVAFLE RIDSEFFKSL QCSDPYTKDY VQRLRDEPLF
401: LVVAQNVQDY QERVQNFKAA AKVALRRVEL VYYKPQEVYD AMRKLAEQTE LSMDDGDTEA GEEHQETDDN RGPPPFVVIP EVVPRKPTFP PSNRALMDDL
501: MSLIYKYGDE RTKARAILCQ IYHYAISDEF SVARDLILMS RLQDGVQLMD ISSQILYNRV MAQLGLCAFR AGYIAEAHGC LSELYSFGRV KELLAQGVQQ
601: SRYHDKTPEQ ERLERRRMMP YHMHINLELL EATHLVCAML IEVPNMAASA FDKRRPMSKT FRRLLEISER QTFVGPPETV RDHVLAATRA LTKGDYEKAF
701: SVISSLDTWK LLRNKEHILE MLKLKIKEEA LRTYLFSYSS CYESLSLDQL TTMFDLSEKQ AHSIVSKMMM HEELHASWDQ PTNCIIFQNV YQTRLQGLLF
801: QMADRLSVLV ESNERAYEAR TGGALEGAPP RRRGGDGQDS YGLGKWQENF VSSQGRRGGG RSGYARRTGG SGRGGGYQND RSGQGSRGGY GGGGSRFHDG
901: RARTQSGMPS RGDRGARLVS LSR
101: KQLEKVVRVN ESTKIPNRYI TAIVLLEDFL AEALANKEAK VKMSSSNARA LVAVKQKLRK NNKQYEDLIQ KCRDNPESFE DDIADEKVLD DDSGDNGSDV
201: DIVDPEPDRD DSSDDNKGNL GGAWEKKLSK KDKIMDKQFL KDPSEITWDI VDKKLKEIVA SRGKKGTGRI ERVEQLTFLT RVAKTPAQKL EILFHVISAQ
301: FDVNPSLLGH MPINVWKKCV DNMLLVLDIL QQYPNIVVDT SVESDEKETQ KGADYDGTIH VTGDLVAFLE RIDSEFFKSL QCSDPYTKDY VQRLRDEPLF
401: LVVAQNVQDY QERVQNFKAA AKVALRRVEL VYYKPQEVYD AMRKLAEQTE LSMDDGDTEA GEEHQETDDN RGPPPFVVIP EVVPRKPTFP PSNRALMDDL
501: MSLIYKYGDE RTKARAILCQ IYHYAISDEF SVARDLILMS RLQDGVQLMD ISSQILYNRV MAQLGLCAFR AGYIAEAHGC LSELYSFGRV KELLAQGVQQ
601: SRYHDKTPEQ ERLERRRMMP YHMHINLELL EATHLVCAML IEVPNMAASA FDKRRPMSKT FRRLLEISER QTFVGPPETV RDHVLAATRA LTKGDYEKAF
701: SVISSLDTWK LLRNKEHILE MLKLKIKEEA LRTYLFSYSS CYESLSLDQL TTMFDLSEKQ AHSIVSKMMM HEELHASWDQ PTNCIIFQNV YQTRLQGLLF
801: QMADRLSVLV ESNERAYEAR TGGALEGAPP RRRGGDGQDS YGLGKWQENF VSSQGRRGGG RSGYARRTGG SGRGGGYQND RSGQGSRGGY GGGGSRFHDG
901: RARTQSGMPS RGDRGARLVS LSR
001: MTSRFFTQVG SESEDESDYE VEVNEVQNDD VNNRYLQSGS EDDDDTDTKR VVKPAKDKRF EEMTYTVDQM KNAMKINDWV SLQENFDKVN KQLEKVMRIT
101: EAVKPPTLYI KTLVMLEDFL NEALANKEAK KKMSTSNSKA LNSMKQKLKK NNKLYEDDIN KYREAPEVEE EKQPEDDDDD DDDDDEVEDD DDSSIDGPTV
201: DPGSDVDEPT DNLTWEKMLS KKDKLLEKLM NKDPKEITWD WVNKKFKEIV AARGKKGTAR FELVDQLTHL TKIAKTPAQK LEILFSVISA QFDVNPGLSG
301: HMPINVWKKC VLNMLTILDI LVKYSNIVVD DTVEPDENET SKPTDYDGKI RVWGNLVAFL ERVDTEFFKS LQCIDPHTRE YVERLRDEPM FLALAQNIQD
401: YFERMGDFKA AAKVALRRVE AIYYKPQEVY DAMRKLAELV EEEEETEEAK EESGPPTSFI VVPEVVPRKP TFPESSRAMM DILVSLIYRN GDERTKARAM
501: LCDINHHALM DNFVTARDLL LMSHLQDNIQ HMDISTQILF NRTMAQLGLC AFRAGMITES HSCLSELYSG QRVRELLAQG VSQSRYHEKT PEQERMERRR
601: QMPYHMHLNL ELLEAVHLIC AMLLEVPNMA ANSHDAKRRV ISKNFRRLLE ISERQAFTAP PENVRDHVMA ATRALTKGDF QKAFEVLNSL EVWRLLKNRD
701: SILDMVKDRI KEEALRTYLF TYSSSYESLS LDQLAKMFDV SEPQVHSIVS KMMINEELHA SWDQPTRCIV FHEVQHSRLQ SLAFQLTEKL SILAESNERA
801: MESRTGGGGL DLSSRRRDNN QDYAGAASGG GGYWQDKANY GQGRQGNRSG YGGGRSSGQN GQWSGQNRGG GYAGRVGSGN RGMQMDGSSR MVSLNRGVRT
101: EAVKPPTLYI KTLVMLEDFL NEALANKEAK KKMSTSNSKA LNSMKQKLKK NNKLYEDDIN KYREAPEVEE EKQPEDDDDD DDDDDEVEDD DDSSIDGPTV
201: DPGSDVDEPT DNLTWEKMLS KKDKLLEKLM NKDPKEITWD WVNKKFKEIV AARGKKGTAR FELVDQLTHL TKIAKTPAQK LEILFSVISA QFDVNPGLSG
301: HMPINVWKKC VLNMLTILDI LVKYSNIVVD DTVEPDENET SKPTDYDGKI RVWGNLVAFL ERVDTEFFKS LQCIDPHTRE YVERLRDEPM FLALAQNIQD
401: YFERMGDFKA AAKVALRRVE AIYYKPQEVY DAMRKLAELV EEEEETEEAK EESGPPTSFI VVPEVVPRKP TFPESSRAMM DILVSLIYRN GDERTKARAM
501: LCDINHHALM DNFVTARDLL LMSHLQDNIQ HMDISTQILF NRTMAQLGLC AFRAGMITES HSCLSELYSG QRVRELLAQG VSQSRYHEKT PEQERMERRR
601: QMPYHMHLNL ELLEAVHLIC AMLLEVPNMA ANSHDAKRRV ISKNFRRLLE ISERQAFTAP PENVRDHVMA ATRALTKGDF QKAFEVLNSL EVWRLLKNRD
701: SILDMVKDRI KEEALRTYLF TYSSSYESLS LDQLAKMFDV SEPQVHSIVS KMMINEELHA SWDQPTRCIV FHEVQHSRLQ SLAFQLTEKL SILAESNERA
801: MESRTGGGGL DLSSRRRDNN QDYAGAASGG GGYWQDKANY GQGRQGNRSG YGGGRSSGQN GQWSGQNRGG GYAGRVGSGN RGMQMDGSSR MVSLNRGVRT
Arabidopsis Description
TIF3C1Eukaryotic translation initiation factor 3 subunit C [Source:UniProtKB/Swiss-Prot;Acc:O49160]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.