Factsheet for Os07t0124500-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

extracellular: 18372294
nucleus: 19621931
nucleus: 23303719
nucleus: 26035336
plasma membrane: 27800704
plastid: 27992503

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 26035336 doi

M Li, X Yin, K Sakata, P Yang, S Komatsu

§Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan., †Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China., ‡National Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan.

msms PMID: 23303719 doi

Q He, L Chen, Y Xu, W Yu

State Key Laboratory for Agrobiotechnology, Institute of Plant Molecular Biology and Agricultural Biotechnology, School of Life Sciences, The Chinese University of Hong Kong, Shatin, Hong Kong.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

msms PMID: 18372294 doi

T Aki, M Shigyo, R Nakano, T Yoneyama, S Yanagisawa

Department of Applied Biological Chemistry, Graduate School of Agricultural and Life Sciences, The University of Tokyo, Tokyo, 113-8657 Japan.

msms PMID: 19621931 doi

T Aki, S Yanagisawa

Department of Applied Biological Chemistry, The University of Tokyo, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os03t0116500-01
Os04t0428900-01
Os05t0235300-01
Os07t0167000-01
Os07t0222300-01
Os07t0503700-00
Os10t0569200-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G56150.1	Os05t0235300-01	AT1G50030.1	23524850
AT3G56150.1	Os07t0167000-01	AT3G57290.1	11029466
AT3G56150.1	Os07t0222300-01	AT3G57290.1	11029466
AT3G56150.1	Os07t0503700-00	AT3G57290.1	11029466
AT3G56150.1	Os03t0116500-01	AT3G61140.1	11029466
AT3G56150.1	Os04t0428900-01	AT4G14110.1	11029466
AT3G56150.1	Os10t0569200-01	AT5G25780.1	11029466

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG35906	Sorghum	cytosol	86.11	86.39
Zm00001d002169_P006	Maize	cytosol	83.76	84.3
Zm00001d002166_P004	Maize	cytosol	83.76	84.3
Os02t0123300-00	Rice	cytosol, mitochondrion, nucleus	5.66	84.13
HORVU2Hr1G058390.1	Barley	cytosol	14.64	84.05
TraesCS5A01G220000.1	Wheat	nucleus	81.62	82.33
TraesCS5A01G406000.1	Wheat	cytosol	80.98	82.12
HORVU5Hr1G063770.2	Barley	nucleus	81.2	81.98
TraesCS5D01G228100.1	Wheat	golgi, unclear	81.2	81.9
TraesCS5B01G410800.1	Wheat	cytosol	81.2	81.9
TraesCS5B01G219100.1	Wheat	nucleus	81.09	81.79
TraesCS5D01G416000.1	Wheat	cytosol	80.98	81.77
Zm00001d020935_P002	Maize	cytosol	71.26	81.05
HORVU5Hr1G098600.1	Barley	cytosol	80.02	80.8
HORVU2Hr1G058370.1	Barley	cytosol	15.28	78.57
Zm00001d002737_P002	Maize	vacuole	79.91	77.19
GSMUA_Achr3P04920_001	Banana	cytosol	68.91	72.31
VIT_16s0039g01140.t01	Wine grape	cytosol	6.3	71.08
VIT_08s0007g07180.t01	Wine grape	cytosol	69.12	68.39
CDY65406	Canola	cytosol	57.91	66.58
KRH41811	Soybean	cytosol	65.6	66.31
KRH68073	Soybean	endoplasmic reticulum	65.28	65.98
PGSC0003DMT400078176	Potato	cytosol	64.32	65.86
Solyc06g076150.2.1	Tomato	cytosol, nucleus, plastid	63.57	65.82
KRH60516	Soybean	endoplasmic reticulum	64.96	65.73
CDX72169	Canola	cytosol	58.55	65.71
CDY16358	Canola	cytosol	58.55	65.71
PGSC0003DMT400046928	Potato	cytosol	64.21	65.18
Solyc01g102600.2.1	Tomato	cytosol	24.79	64.99
Solyc01g102570.2.1	Tomato	cytosol, nucleus	24.68	64.89
CDY27241	Canola	cytosol	59.83	64.59
Bra022520.1-P	Field mustard	cytosol	59.4	64.28
Bra007220.1-P	Field mustard	cytosol	61.22	64.02
AT3G56150.1	Thale cress	cytosol	61.22	63.67
Solyc01g102560.2.1	Tomato	nucleus	20.51	61.94
CDY06037	Canola	cytosol	48.18	61.78
Bra007396.1-P	Field mustard	cytosol, mitochondrion	52.24	59.2
CDX71953	Canola	cytosol	51.71	59.02
AT3G22860.1	Thale cress	cytosol	48.4	56.27
Solyc01g102590.2.1	Tomato	nucleus	22.76	51.95

Protein Annotations

Gene3D:1.10.10.10	MapMan:17.4.1.3.3	EntrezGene:4342306	EMBL:AK101000	ProteinID:BAC56812.1	ProteinID:BAF20718.1
ProteinID:BAS99886.1	ncoils:Coil	InterPro:EIF3C	InterPro:EIF3C_N_dom	GO:GO:0001732	GO:GO:0002183
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003743	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005852	GO:GO:0006412
GO:GO:0006413	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016043	GO:GO:0016282	GO:GO:0019538	GO:GO:0031369	GO:GO:0033290	InterPro:IPR000717
InterPro:IPR036388	HAMAP:MF_03002	EnsemblPlantsGene:Os07g0124500	EnsemblPlants:Os07t0124500-01	InterPro:PCI_dom	PFAM:PF01399
PFAM:PF05470	PFscan:PS50250	PANTHER:PTHR13937	UniProt:Q84LG6	SMART:SM00088	SMART:SM00753
SUPFAM:SSF46785	UniParc:UPI00000046D3	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	RefSeq:XP_015647083.1	SEG:seg

Description

"eukaryotic translation initiation factor 3, subunit c", EUKARYOTIC INITIATION FACTOR 3CSimilar to Eukaryotic translation initiation factor 3 subunit 8 (eIF3 p110) (eIF3c). (Os07t0124500-01)

Coordinates

chr7:+:1274555..1278717

Molecular Weight (calculated)

106165.0 Da

IEP (calculated)

4.995

GRAVY (calculated)

-0.749

Length

936 amino acids

Sequence
(BLAST)

001: MASRFWGQGD SDSEEEEQEI ESEAGSESED EGGDAGGRSN QNRYLRTTNA SDSDESDSGQ RVVRSLKDKR NEELKITVDQ MRNAMKINDW VNLQESFEKL
101: NKQLEKVVRV NESTTVPNMY VKALVLLEDF LAEALANKEA KKKMSSSNAK ALNAMKQKLK KNNKQYENLI QECREHPERF EDDDVEDKDD DDETDDDASD
201: ADIEDPEKMV MSESEEEGDD DEEGDQDGGA WEKKISKKDK LMDKQFLKDP SEITWDIVDK KLKEIVASRG KKGTGRIERV EQLTFLTRVA KTPAQKLEIL
301: FHVISAQFDV NPSLLGHMPV NMWKKCVNNM LLVLDILQQY PNIVVDTSVE PDEKETQKGA DYDGQIHVTG DLVAFLERLD SEFFKSLQCT DPYTKDYVQR
401: LRDEPLFLVV AQNVQDYLER VGNFKAEAKV ALRRVELVYY KPQEVYDAMR KLAEQDEDSR EDDDADADEE RQVVDDNRGP PPFVVIPEVV PRKPTFPESG
501: RALMDALMSV IYKYGDERTK ARAMLCDIYH HAISDKFSVA RDLLLMSHLQ DGVQLMDISS QILFNRVMAQ LGLCAFRAGL IIEAHGCLSE LYSTGRVKEL
601: LAQGVQQSRY HEKTPEQERL ERRRQMPYHM HINLELLEAT HLICAMLIEV PNMAASTYDR RKSMNRTFRR LLEISERQTF VGPPENVRDH VMAATRALRK
701: GDYQKAFDVI NSLEIWKLLR NKEHVLEMLK LKIKEEALRT YLLSYSSCYE SLSLDQLTTM FDLSEQQAHS IVSKMMMHEE LHASWDQPTK CIIFHNVDQT
801: RLQGLLFQMS DKLSVLVESN ERAYEAKTGG TLEGAPPRRR GGDGQDSSNL GKWQENFVSS QGRQGGGRSG YSGRVGGPGR GGGGYQRDRG SQGSRGGYGG
901: GSRFQDGGRS RNQSGSMARG GDGGARMVSL NRSGRG

Best Arabidopsis Sequence Match ( AT3G56150.1 )
(BLAST)

001: MTSRFFTQVG SESEDESDYE VEVNEVQNDD VNNRYLQSGS EDDDDTDTKR VVKPAKDKRF EEMTYTVDQM KNAMKINDWV SLQENFDKVN KQLEKVMRIT
101: EAVKPPTLYI KTLVMLEDFL NEALANKEAK KKMSTSNSKA LNSMKQKLKK NNKLYEDDIN KYREAPEVEE EKQPEDDDDD DDDDDEVEDD DDSSIDGPTV
201: DPGSDVDEPT DNLTWEKMLS KKDKLLEKLM NKDPKEITWD WVNKKFKEIV AARGKKGTAR FELVDQLTHL TKIAKTPAQK LEILFSVISA QFDVNPGLSG
301: HMPINVWKKC VLNMLTILDI LVKYSNIVVD DTVEPDENET SKPTDYDGKI RVWGNLVAFL ERVDTEFFKS LQCIDPHTRE YVERLRDEPM FLALAQNIQD
401: YFERMGDFKA AAKVALRRVE AIYYKPQEVY DAMRKLAELV EEEEETEEAK EESGPPTSFI VVPEVVPRKP TFPESSRAMM DILVSLIYRN GDERTKARAM
501: LCDINHHALM DNFVTARDLL LMSHLQDNIQ HMDISTQILF NRTMAQLGLC AFRAGMITES HSCLSELYSG QRVRELLAQG VSQSRYHEKT PEQERMERRR
601: QMPYHMHLNL ELLEAVHLIC AMLLEVPNMA ANSHDAKRRV ISKNFRRLLE ISERQAFTAP PENVRDHVMA ATRALTKGDF QKAFEVLNSL EVWRLLKNRD
701: SILDMVKDRI KEEALRTYLF TYSSSYESLS LDQLAKMFDV SEPQVHSIVS KMMINEELHA SWDQPTRCIV FHEVQHSRLQ SLAFQLTEKL SILAESNERA
801: MESRTGGGGL DLSSRRRDNN QDYAGAASGG GGYWQDKANY GQGRQGNRSG YGGGRSSGQN GQWSGQNRGG GYAGRVGSGN RGMQMDGSSR MVSLNRGVRT

Arabidopsis Description

TIF3C1Eukaryotic translation initiation factor 3 subunit C [Source:UniProtKB/Swiss-Prot;Acc:O49160]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.