Factsheet for Os07t0222300-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, cytosol

Predictor Summary:

nucleus 3
cytosol 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plasma membrane
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

plasma membrane: 27800704

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os02t0123300-00
Os07t0124500-01
Os07t0490800-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G57290.1	Os07t0490800-01	AT1G02090.1	11029466
AT3G57290.1	Os02t0123300-00	AT3G56150.1	11029466
AT3G57290.1	Os07t0124500-01	AT3G56150.1	11029466

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG34696	Sorghum	cytosol	89.29	89.29
TraesCS5D01G269200.1	Wheat	cytosol	80.87	80.5
TraesCS5B01G260000.2	Wheat	cytosol, golgi, unclear	80.87	80.5
TraesCS5A01G261900.1	Wheat	cytosol	80.87	80.5
GSMUA_Achr7P21330_001	Banana	cytosol	79.95	79.77
Os07t0167000-01	Rice	cytosol	72.67	76.87
HORVU5Hr1G072560.1	Barley	cytosol	80.41	75.11
KRH72039	Soybean	endoplasmic reticulum	74.03	74.37
KRH33198	Soybean	endoplasmic reticulum	74.03	74.37
VIT_00s0252g00070.t01	Wine grape	cytosol	72.44	72.77
Os07t0503700-00	Rice	cytosol, plasma membrane	69.25	70.53
CDY19244	Canola	extracellular	7.06	70.45
PGSC0003DMT400076704	Potato	cytosol	69.02	69.18
Solyc10g079880.1.1	Tomato	cytosol, nucleus	69.02	69.18
AT3G57290.1	Thale cress	cytosol	69.25	68.93
CDY06117	Canola	cytosol	68.56	68.25
Bra007317.1-P	Field mustard	cytosol	68.34	68.03
CDX88939	Canola	cytosol	68.34	68.03
CDY30993	Canola	cytosol	68.11	67.8
Bra014633.1-P	Field mustard	cytosol	68.11	67.8
CDX72053	Canola	cytosol	67.88	67.57
Zm00001d010441_P001	Maize	cytosol	15.26	63.81
Bra034326.1-P	Field mustard	cytosol	23.23	44.35
Zm00001d020588_P001	Maize	plasma membrane	16.63	40.56
CDY70248	Canola	cytosol	25.06	37.16
CDY70454	Canola	mitochondrion	7.97	32.71
CDX79391	Canola	cytosol, extracellular, nucleus	10.93	21.62
CDY19243	Canola	cytosol	6.38	16.0

Protein Annotations

Gene3D:1.25.40.570	MapMan:17.4.1.3.5	EntrezGene:4342741	ProteinID:BAC45186.1	ProteinID:BAF21116.1	ProteinID:BAT00657.1
ProteinID:EEE66816.1	GO:GO:0001732	GO:GO:0002183	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003743	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0005852	GO:GO:0006412	GO:GO:0006413	GO:GO:0008135	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0016282	GO:GO:0019538
GO:GO:0033290	GO:GO:0071540	InterPro:IPR000717	HAMAP:MF_03004	EnsemblPlantsGene:Os07g0222300	EnsemblPlants:Os07t0222300-01
InterPro:PCI_dom	PFAM:PF01399	PFAM:PF09440	PIRSF:PIRSF016255	PFscan:PS50250	PANTHER:PTHR10317
PANTHER:PTHR10317:SF0	UniProt:Q8GVI0	SMART:SM00088	SMART:SM00753	SMART:SM01186	SUPFAM:SSF46785
UniParc:UPI00000AE0CD	InterPro:WH_DNA-bd_sf	RefSeq:XP_015646769.1	InterPro:eIF3e	InterPro:eIF3e_N	:

Description

EUKARYOTIC INITIATION FACTOR 3EEukaryotic translation initiation factor 3 subunit E, Organ growth and pollen development (Os07t0222300-01);Similar to Eukaryotic initiation factor 3e. (Os07t0222300-02)

Coordinates

chr7:-:6763498..6767271

Molecular Weight (calculated)

51309.8 Da

IEP (calculated)

5.625

GRAVY (calculated)

-0.268

Length

439 amino acids

Sequence
(BLAST)

001: MAEHDLTARM AGQMDCHLVF PLLEFLQERA LYANKEILEA KLRLLSGTNM VDYAMDIHKS LHDTDEVPDD MVRRRTDVVS RLRALDEATA PIVSFLQNQQ
101: LVQELRPDKQ YNLHMLQDRF QIGPEQIETL YQFAKFQFDC GNYSDAAVYL YQYRALCTNS ERSLSALWGK LAAEILMQNW DVALDELNRL KEIIDSKNFS
201: SPLNQLQNRI WLMHWSIFIF FNHENGRNGI IDLFFQDRYL NAIQTNAPHL LRYLATAVVV NKRRRNMLKE LIKVIQQEQH SYKDPITEFL ECLYVNYDFD
301: GAQQKLIECE QVILNDPFLG KRIEEGNFVT VPLRDEFLEN ARLFIFETYC RIHRCIDIGM LSQKLNMSYD EAELWIMNLV RNSKLDAKID SVSGTLIMTT
401: NHVNIHEQVI ESLKNLNMRT FLLAKNIVEP AQAAQQAAR

Best Arabidopsis Sequence Match ( AT3G57290.1 )
(BLAST)

001: MEESKQNYDL TPLIAPNLDR HLVFPIFEFL QERQLYPDEQ ILKSKIQLLN QTNMVDYAMD IHKSLYHTED APQEMVERRT EVVARLKSLE EAAAPLVSFL
101: LNPNAVQELR ADKQYNLQML KERYQIGPDQ IEALYQYAKF QFECGNYSGA ADYLYQYRTL CSNLERSLSA LWGKLASEIL MQNWDIALEE LNRLKEIIDS
201: KSFSSPLNQV QNRIWLMHWG LYIFFNHDNG RTQIIDLFNQ DKYLNAIQTS APHLLRYLAT AFIVNKRRRP QLKEFIKVIQ QEHYSYKDPI IEFLACVFVN
301: YDFDGAQKKM KECEEVIVND PFLGKRVEDG NFSTVPLRDE FLENARLFVF ETYCKIHQRI DMGVLAEKLN LNYEEAERWI VNLIRTSKLD AKIDSESGTV
401: IMEPTQPNVH EQLINHTKGL SGRTYKLVNQ LLEHTQAQAT R

Arabidopsis Description

TIF3E1Eukaryotic translation initiation factor 3 subunit E [Source:UniProtKB/TrEMBL;Acc:A0A178VL03]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.