Factsheet for VIT_00s0252g00070.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH72039	Soybean	endoplasmic reticulum	89.24	89.24
KRH33198	Soybean	endoplasmic reticulum	89.24	89.24
GSMUA_Achr7P21330_001	Banana	cytosol	75.97	75.45
KXG34696	Sorghum	cytosol	75.29	74.94
Zm00001d029511_P001	Maize	vacuole	30.89	73.77
Zm00001d005238_P001	Maize	plasma membrane	73.23	73.39
Zm00001d019182_P001	Maize	cytosol	73.0	73.17
Os07t0222300-01	Rice	cytosol, plasma membrane	72.77	72.44
Zm00001d029828_P001	Maize	cytosol	22.65	69.72
TraesCS5A01G261900.1	Wheat	cytosol	70.02	69.39
TraesCS5B01G260000.2	Wheat	cytosol, golgi, unclear	70.02	69.39
TraesCS5D01G269200.1	Wheat	cytosol	70.02	69.39
Zm00001d040830_P001	Maize	cytosol	32.27	68.45
Os07t0167000-01	Rice	cytosol	62.7	66.02
CDY19244	Canola	extracellular	6.64	65.91
HORVU5Hr1G072560.1	Barley	cytosol	69.34	64.47
Os07t0503700-00	Rice	cytosol, plasma membrane	59.95	60.79
Zm00001d020479_P005	Maize	cytosol	17.85	54.93
Bra034326.1-P	Field mustard	cytosol	28.38	53.91
Zm00001d051103_P004	Maize	plasma membrane	25.63	53.08
Zm00001d029554_P001	Maize	plasma membrane, plastid	31.81	52.06
Zm00001d014873_P001	Maize	plasma membrane, plastid	31.35	51.31
Zm00001d020635_P001	Maize	mitochondrion	25.17	47.83
Zm00001d010441_P001	Maize	cytosol	11.44	47.62
CDY70248	Canola	cytosol	31.35	46.28
CDY70454	Canola	mitochondrion	10.53	42.99
Zm00001d051050_P001	Maize	plasma membrane	34.55	41.03
Zm00001d031414_P001	Maize	cytosol	14.87	36.72
Zm00001d020588_P001	Maize	plasma membrane	13.73	33.33
CDX79391	Canola	cytosol, extracellular, nucleus	11.44	22.52
CDY19243	Canola	cytosol	6.64	16.57

Protein Annotations

Gene3D:1.25.40.570	EntrezGene:100243469	wikigene:100243469	MapMan:17.4.1.3.5	ProteinID:CCB57534	ProteinID:CCB57534.1
ncoils:Coil	UniProt:F6HS75	EMBL:FN596242	GO:GO:0001731	GO:GO:0001732	GO:GO:0002183
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003743	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005852	GO:GO:0006412
GO:GO:0006413	GO:GO:0006446	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016043	GO:GO:0016282	GO:GO:0017148	GO:GO:0019538	GO:GO:0033290
GO:GO:0071540	InterPro:IPR000717	EntrezGene:LOC100243469	wikigene:LOC100243469	HAMAP:MF_03004	InterPro:PCI_dom
PFAM:PF01399	PFAM:PF09440	PIRSF:PIRSF016255	PFscan:PS50250	PANTHER:PTHR10317	PANTHER:PTHR10317:SF0
SMART:SM00088	SMART:SM00753	SMART:SM01186	SUPFAM:SSF46785	TIGR:TC52371	TIGR:TC59823
UniParc:UPI00015CB1C8	ArrayExpress:VIT_00s0252g00070	EnsemblPlantsGene:VIT_00s0252g00070	EnsemblPlants:VIT_00s0252g00070.t01	unigene:Vvi.5027	InterPro:WH_DNA-bd_sf
RefSeq:XP_002284533	RefSeq:XP_002284533.1	InterPro:eIF3e	InterPro:eIF3e_N	:	:

Description

Eukaryotic translation initiation factor 3 subunit E [Source:UniProtKB/TrEMBL;Acc:F6HS75]

Coordinates

chrUn:-:17670629..17675946

Molecular Weight (calculated)

51129.1 Da

IEP (calculated)

6.152

GRAVY (calculated)

-0.416

Length

437 amino acids

Sequence
(BLAST)

001: MATHDLTPRI APNLDRHLVF PLLEFLQERQ LYPDEQILKA KIELLNKTNM VDYAMDIHKS LYHTEDVPQD MVERRAEVVA RLKALEEAAA PLVSFLQNPN
101: AVQELRADKQ YNLQMLNDRY QIGQEQIEAL YQYAKFQFEC GNYSGAADYL YQYRALCTNS ERSLSALWGK LAAEILMQNW DTAFEELNRL KEIIDSKSYA
201: SPLNQVQSRI WLMHWSLFIF FNHDNGRTHI IDLFNQDKYL NAIQTNAPHL LRYLATALIV NKRRRTQFKD FIKVIQQEQY AFKDPITEFL ACVYVNYDFD
301: GAQKKMRECE EVILNDPFLG KRVEEGSFST VPLRDEFLEN ARLFIFETYC RIHQRIDMGV LSDKLNLNYE EAERWIVNLI TTSKLDAKID SKSGTVVMEP
401: NHPNVYQQII DHTKAVSGRT YKLVNQLLEK AQTQAAR

Best Arabidopsis Sequence Match ( AT3G57290.1 )
(BLAST)

001: MEESKQNYDL TPLIAPNLDR HLVFPIFEFL QERQLYPDEQ ILKSKIQLLN QTNMVDYAMD IHKSLYHTED APQEMVERRT EVVARLKSLE EAAAPLVSFL
101: LNPNAVQELR ADKQYNLQML KERYQIGPDQ IEALYQYAKF QFECGNYSGA ADYLYQYRTL CSNLERSLSA LWGKLASEIL MQNWDIALEE LNRLKEIIDS
201: KSFSSPLNQV QNRIWLMHWG LYIFFNHDNG RTQIIDLFNQ DKYLNAIQTS APHLLRYLAT AFIVNKRRRP QLKEFIKVIQ QEHYSYKDPI IEFLACVFVN
301: YDFDGAQKKM KECEEVIVND PFLGKRVEDG NFSTVPLRDE FLENARLFVF ETYCKIHQRI DMGVLAEKLN LNYEEAERWI VNLIRTSKLD AKIDSESGTV
401: IMEPTQPNVH EQLINHTKGL SGRTYKLVNQ LLEHTQAQAT R

Arabidopsis Description

TIF3E1Eukaryotic translation initiation factor 3 subunit E [Source:UniProtKB/TrEMBL;Acc:A0A178VL03]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.