Factsheet for Zm00001d020588_P001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 2
plasma membrane 4
extracellular 2
endoplasmic reticulum 3
vacuole 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	plastid, secretory
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plasma membrane
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	endoplasmic reticulum
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d002166_P004
Zm00001d002169_P006
Zm00001d002737_P002
Zm00001d004607_P001
Zm00001d006410_P013
Zm00001d020231_P001
Zm00001d020935_P002
Zm00001d021522_P002
Zm00001d023916_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G57290.1	Zm00001d004607_P001	AT1G02090.1	11029466
AT3G57290.1	Zm00001d006410_P013	AT1G02090.1	11029466
AT3G57290.1	Zm00001d020231_P001	AT1G02090.1	11029466
AT3G57290.1	Zm00001d021522_P002	AT1G02090.1	11029466
AT3G57290.1	Zm00001d023916_P001	AT1G02090.1	11029466
AT3G57290.1	Zm00001d002166_P004	AT3G56150.1	11029466
AT3G57290.1	Zm00001d002169_P006	AT3G56150.1	11029466
AT3G57290.1	Zm00001d002737_P002	AT3G56150.1	11029466
AT3G57290.1	Zm00001d020935_P002	AT3G56150.1	11029466

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d010441_P001	Maize	cytosol	30.56	52.38
Zm00001d029828_P001	Maize	cytosol	36.11	45.77
Zm00001d020479_P005	Maize	cytosol	32.78	41.55
Zm00001d029511_P001	Maize	vacuole	40.0	39.34
Zm00001d020635_P001	Maize	mitochondrion	37.78	29.57
Zm00001d029554_P001	Maize	plasma membrane, plastid	41.67	28.09
Zm00001d014873_P001	Maize	plasma membrane, plastid	41.11	27.72
Zm00001d051050_P001	Maize	plasma membrane	45.0	22.01
Zm00001d051103_P004	Maize	plasma membrane	24.44	20.85
Zm00001d005238_P001	Maize	plasma membrane	42.22	17.43
Os07t0222300-01	Rice	cytosol, plasma membrane	40.56	16.63
Zm00001d019182_P001	Maize	cytosol	39.44	16.28
GSMUA_Achr7P21330_001	Banana	cytosol	39.44	16.14
Os07t0167000-01	Rice	cytosol	36.67	15.9
CDY70454	Canola	mitochondrion	8.89	14.95
KRH33198	Soybean	endoplasmic reticulum	35.56	14.65
Os07t0503700-00	Rice	cytosol, plasma membrane	35.0	14.62
KRH72039	Soybean	endoplasmic reticulum	35.0	14.42
AT3G57290.1	Thale cress	cytosol	35.0	14.29
VIT_00s0252g00070.t01	Wine grape	cytosol	33.33	13.73
PGSC0003DMT400076704	Potato	cytosol	33.33	13.7
Bra007317.1-P	Field mustard	cytosol	33.33	13.61
Bra014633.1-P	Field mustard	cytosol	33.33	13.61
CDX88939	Canola	cytosol	33.33	13.61
CDY06117	Canola	cytosol	33.33	13.61
CDY30993	Canola	cytosol	33.33	13.61
Solyc10g079880.1.1	Tomato	cytosol, nucleus	32.78	13.47
CDX72053	Canola	cytosol	32.78	13.38
Zm00001d040830_P001	Maize	cytosol	14.44	12.62
CDY19244	Canola	extracellular	2.78	11.36
Bra034326.1-P	Field mustard	cytosol	14.44	11.3
CDY19243	Canola	cytosol	9.44	9.71
CDX79391	Canola	cytosol, extracellular, nucleus	10.56	8.56
CDY70248	Canola	cytosol	13.33	8.11
Zm00001d031414_P001	Maize	cytosol	6.67	6.78

Protein Annotations

Gene3D:1.10.3080.10	MapMan:35.1	UniProt:A0A1D6I4U3	InterPro:Cl-channel_core	InterPro:Cl-channel_volt-gated	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003743	GO:GO:0005215	GO:GO:0005216	GO:GO:0005247
GO:GO:0005488	GO:GO:0005575	GO:GO:0006412	GO:GO:0006413	GO:GO:0006810	GO:GO:0006821
GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	GO:GO:0019538	GO:GO:0034220	GO:GO:0055085	GO:GO:1902476	InterPro:IPR014743
ProteinID:ONM55162.1	PFAM:PF00654	PANTHER:PTHR43427	PANTHER:PTHR43427:SF2	SUPFAM:SSF81340	TMHMM:TMhelix
UniParc:UPI0008440C22	EnsemblPlantsGene:Zm00001d020588	EnsemblPlants:Zm00001d020588_P001	EnsemblPlants:Zm00001d020588_T001	SEG:seg	:

Description

Eukaryotic translation initiation factor 3 subunit E

Coordinates

chr7:+:123764550..123767506

Molecular Weight (calculated)

19616.5 Da

IEP (calculated)

8.607

GRAVY (calculated)

0.695

Length

180 amino acids

Sequence
(BLAST)

001: MIGAAVGAVF GGSAAYLINS ALPGNAAVAQ PQAYALVGMA ATLASVCSVP LTSVLLLFEL TKDYMILLPL MTLRSVLTRL KLCISMPNFS LSVVTTQGLL
101: ITFTSMVLCA QTVSEMYLNA IQTNAHHLIR YLATAVVVNK RRRNMLTELI KVIQQEHHSY KDPVTEFLEC LYVNYVVVGF

Best Arabidopsis Sequence Match ( AT1G55620.2 )
(BLAST)

001: MSSGGAGEYN EDRHLLRSTD GDEVGIGGGE GDLDVESQSP AIRSGAGGVR DLFKHIDRRF SLSGRRLSFK RMENIRVDRE RHNPSSSSAF SAAGEEDGGG
101: ISNLHSVDDR NDEYGFDEEV LGDSAPPEWA LLLIGCLIGV AAGICVAGFN KGVHVIHEWA WAGTPNEGAA WLRLQRLADT WHRILLIPVT GGVIVGMMHG
201: LLEILDQIRQ SNSSQRQGLD FLAGIYPVIK AIQAAVTLGT GCSLGPEGPS VDIGKSCANG FALMMENNRE RRIALTAAGA ASGIASGFNA AVAGCFFAIE
301: TVLRPLRAEN SPPFTTAMII LASVISSTVS NALLGTQSAF TVPSYDLKSA AELPLYLILG MLCGAVSVVF SRLVTWFTKS FDFIKDKFGL PAIVCPALGG
401: LGAGIIALKY PGILYWGFTN VEEILHTGKS ASAPGIWLLA QLAAAKVVAT ALCKGSGLVG GLYAPSLMIG AAVGAVFGGS AAEIINRAIP GNAAVAQPQA
501: YALVGMAATL ASMCSVPLTS VLLLFELTKD YRILLPLMGA VGLAIWVPSV ANQGKESDSS EGRSTGRGYS SLSPSERKTE GVWRHTDNAD SLELTVIENP
601: DHNSFLDEET ILEDLKVMRV MSKNYVKVSS GTTLREARNI LKESHQNCIM VVDDDDFLAG ILTHGDIRRY LSNNASTILD ENTCPVSSVC TKKISYRGQE
701: RGLLTCYPDA TVGVAKELME ARGVKQLPVV KRGEVIHKGK RRKLLGLLHY DSIWTFLRDE MSRRRSINDR RKDKEVGTNG H

Arabidopsis Description

CLC-FChloride channel protein CLC-f [Source:UniProtKB/Swiss-Prot;Acc:Q8RXR2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.