Factsheet for Bra007317.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra007220.1-P
Bra012303.1-P
Bra022520.1-P
Bra032666.1-P
Bra033219.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G57290.1	Bra012303.1-P	AT1G02090.1	11029466
AT3G57290.1	Bra032666.1-P	AT1G02090.1	11029466
AT3G57290.1	Bra033219.1-P	AT1G02090.1	11029466
AT3G57290.1	Bra007220.1-P	AT3G56150.1	11029466
AT3G57290.1	Bra022520.1-P	AT3G56150.1	11029466

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY06117	Canola	cytosol	99.77	99.77
CDX72053	Canola	cytosol	98.64	98.64
Bra014633.1-P	Field mustard	cytosol	96.83	96.83
AT3G57290.1	Thale cress	cytosol	93.88	93.88
PGSC0003DMT400076704	Potato	cytosol	82.99	83.56
Solyc10g079880.1.1	Tomato	cytosol, nucleus	82.99	83.56
GSMUA_Achr7P21330_001	Banana	cytosol	73.24	73.41
Zm00001d029511_P001	Maize	vacuole	30.16	72.68
KXG34696	Sorghum	cytosol	71.88	72.21
Zm00001d005238_P001	Maize	plasma membrane	71.2	72.02
Zm00001d019182_P001	Maize	cytosol	70.52	71.33
Zm00001d029828_P001	Maize	cytosol	22.22	69.01
Os07t0222300-01	Rice	cytosol, plasma membrane	68.03	68.34
TraesCS5D01G269200.1	Wheat	cytosol	68.03	68.03
TraesCS5B01G260000.2	Wheat	cytosol, golgi, unclear	68.03	68.03
TraesCS5A01G261900.1	Wheat	cytosol	68.03	68.03
Zm00001d040830_P001	Maize	cytosol	30.61	65.53
Os07t0167000-01	Rice	cytosol	60.32	64.1
HORVU5Hr1G072560.1	Barley	cytosol	67.12	62.98
Bra034326.1-P	Field mustard	cytosol	30.39	58.26
Os07t0503700-00	Rice	cytosol, plasma membrane	56.46	57.77
Zm00001d020479_P005	Maize	cytosol	17.46	54.23
Zm00001d029554_P001	Maize	plasma membrane, plastid	30.84	50.94
Zm00001d014873_P001	Maize	plasma membrane, plastid	30.39	50.19
Zm00001d010441_P001	Maize	cytosol	11.79	49.52
Zm00001d051103_P004	Maize	plasma membrane	23.36	48.82
Zm00001d020635_P001	Maize	mitochondrion	24.94	47.83
Zm00001d051050_P001	Maize	plasma membrane	33.79	40.49
Zm00001d031414_P001	Maize	cytosol	14.51	36.16
Zm00001d020588_P001	Maize	plasma membrane	13.61	33.33

Protein Annotations

Gene3D:1.25.40.570	MapMan:17.4.1.3.5	EnsemblPlantsGene:Bra007317	EnsemblPlants:Bra007317.1	EnsemblPlants:Bra007317.1-P	GO:GO:0001731
GO:GO:0001732	GO:GO:0002183	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003743
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005852
GO:GO:0006412	GO:GO:0006413	GO:GO:0006446	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0016282	GO:GO:0019538	GO:GO:0033290
GO:GO:0071540	InterPro:IPR000717	UniProt:M4CSX5	HAMAP:MF_03004	InterPro:PCI_dom	PFAM:PF01399
PFAM:PF09440	PIRSF:PIRSF016255	PFscan:PS50250	PANTHER:PTHR10317	PANTHER:PTHR10317:SF0	SMART:SM00088
SMART:SM00753	SMART:SM01186	SUPFAM:SSF46785	UniParc:UPI0002542C8C	InterPro:WH_DNA-bd_sf	InterPro:eIF3e
InterPro:eIF3e_N	:	:	:	:	:

Description

AT3G57290 (E=5e-246) EIF3E, TIF3E1, ATEIF3E-1, INT-6, ATINT6, INT6 | EIF3E (EUKARYOTIC TRANSLATION INITIATION FACTOR 3E); translation initiation factor

Coordinates

chrA09:-:28549334..28551440

Molecular Weight (calculated)

51622.9 Da

IEP (calculated)

5.998

GRAVY (calculated)

-0.397

Length

441 amino acids

Sequence
(BLAST)

001: MAETKENYDL TPRVAPNLDR HLVFPILEFL QERQLYPDEQ ILKFKIELLN KTNMVDYAMD IHKSLYHTED APQDMVERRA EVVARLKSLE EAAAPLVTFL
101: LNPAAVQELR ADKQYNLQML KERYQIGPDQ IEALYQYAKF QFECGNYSGA ADYLYQYRTL CSNLERSLSA LWGKLASEIL MQNWDIAFEE LNRVKDIIDS
201: KSFASPLNQV QNRIWLMHWG LYIFFNHDNG RTQIIDLFNQ DKYLNAIQTS APHLLRYLAT AFIVNKRKRP QLKEFIKVIQ QEHYSYKDPI VEFLACVFVN
301: YDFDGAQKKM KECEEVIVND PFLGKRVENG NFSTVPLRDE FLENARLFIF ETYCRIHQRI DMGVLAEKLN LNYEEAERWI VNLIRTSKLD AKIDSEAGTV
401: IMEPTQPNVH EQLINHTKAL SGRTYKLVTQ LLEHTQGQAA R

Best Arabidopsis Sequence Match ( AT3G57290.1 )
(BLAST)

001: MEESKQNYDL TPLIAPNLDR HLVFPIFEFL QERQLYPDEQ ILKSKIQLLN QTNMVDYAMD IHKSLYHTED APQEMVERRT EVVARLKSLE EAAAPLVSFL
101: LNPNAVQELR ADKQYNLQML KERYQIGPDQ IEALYQYAKF QFECGNYSGA ADYLYQYRTL CSNLERSLSA LWGKLASEIL MQNWDIALEE LNRLKEIIDS
201: KSFSSPLNQV QNRIWLMHWG LYIFFNHDNG RTQIIDLFNQ DKYLNAIQTS APHLLRYLAT AFIVNKRRRP QLKEFIKVIQ QEHYSYKDPI IEFLACVFVN
301: YDFDGAQKKM KECEEVIVND PFLGKRVEDG NFSTVPLRDE FLENARLFVF ETYCKIHQRI DMGVLAEKLN LNYEEAERWI VNLIRTSKLD AKIDSESGTV
401: IMEPTQPNVH EQLINHTKGL SGRTYKLVNQ LLEHTQAQAT R

Arabidopsis Description

TIF3E1Eukaryotic translation initiation factor 3 subunit E [Source:UniProtKB/TrEMBL;Acc:A0A178VL03]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.