Factsheet for Zm00001d051050_P001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plasma membrane 4
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	secretory
MultiLoc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d002166_P004
Zm00001d002169_P006
Zm00001d002737_P002
Zm00001d004607_P001
Zm00001d006410_P013
Zm00001d020231_P001
Zm00001d020935_P002
Zm00001d021522_P002
Zm00001d023916_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G57290.1	Zm00001d004607_P001	AT1G02090.1	11029466
AT3G57290.1	Zm00001d006410_P013	AT1G02090.1	11029466
AT3G57290.1	Zm00001d020231_P001	AT1G02090.1	11029466
AT3G57290.1	Zm00001d021522_P002	AT1G02090.1	11029466
AT3G57290.1	Zm00001d023916_P001	AT1G02090.1	11029466
AT3G57290.1	Zm00001d002166_P004	AT3G56150.1	11029466
AT3G57290.1	Zm00001d002169_P006	AT3G56150.1	11029466
AT3G57290.1	Zm00001d002737_P002	AT3G56150.1	11029466
AT3G57290.1	Zm00001d020935_P002	AT3G56150.1	11029466

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d029511_P001	Maize	vacuole	44.84	90.16
Zm00001d020635_P001	Maize	mitochondrion	47.01	75.22
Zm00001d029828_P001	Maize	cytosol	27.72	71.83
Zm00001d029554_P001	Maize	plasma membrane, plastid	48.37	66.67
Zm00001d014873_P001	Maize	plasma membrane, plastid	47.83	65.92
CDY19244	Canola	extracellular	7.88	65.91
Zm00001d051103_P004	Maize	plasma membrane	32.07	55.92
Zm00001d010441_P001	Maize	cytosol	14.95	52.38
Zm00001d020479_P005	Maize	cytosol	19.02	49.3
Zm00001d020588_P001	Maize	plasma membrane	22.01	45.0
Zm00001d040830_P001	Maize	cytosol	24.18	43.2
Zm00001d005238_P001	Maize	plasma membrane	47.83	40.37
GSMUA_Achr7P21330_001	Banana	cytosol	45.92	38.41
Zm00001d019182_P001	Maize	cytosol	45.38	38.3
PGSC0003DMT400076704	Potato	cytosol	42.12	35.39
KRH33198	Soybean	endoplasmic reticulum	41.85	35.24
Solyc10g079880.1.1	Tomato	cytosol, nucleus	41.85	35.16
AT3G57290.1	Thale cress	cytosol	41.85	34.92
TraesCS5A01G261900.1	Wheat	cytosol	41.85	34.92
TraesCS5B01G260000.2	Wheat	cytosol, golgi, unclear	41.85	34.92
TraesCS5D01G269200.1	Wheat	cytosol	41.85	34.92
VIT_00s0252g00070.t01	Wine grape	cytosol	41.03	34.55
KRH72039	Soybean	endoplasmic reticulum	41.03	34.55
CDY30993	Canola	cytosol	41.03	34.24
Bra014633.1-P	Field mustard	cytosol	41.03	34.24
CDX88939	Canola	cytosol	41.03	34.24
CDY06117	Canola	cytosol	40.49	33.79
Bra007317.1-P	Field mustard	cytosol	40.49	33.79
CDX72053	Canola	cytosol	40.22	33.56
Zm00001d031414_P001	Maize	cytosol	15.76	32.77
HORVU5Hr1G072560.1	Barley	cytosol	41.3	32.34
Bra034326.1-P	Field mustard	cytosol	17.39	27.83
CDY70248	Canola	cytosol	17.66	21.96
CDX79391	Canola	cytosol, extracellular, nucleus	10.6	17.57
CDY70454	Canola	mitochondrion	4.35	14.95
CDY19243	Canola	cytosol	4.89	10.29

Protein Annotations

Gene3D:1.10.3080.10	MapMan:17.4.1.3.5	MapMan:24.2.16	UniProt:A0A1D6Q4M6	ProteinID:AQK53510.1	InterPro:Cl-channel_core
InterPro:Cl-channel_volt-gated	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003743	GO:GO:0005215
GO:GO:0005216	GO:GO:0005247	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0006412
GO:GO:0006413	GO:GO:0006810	GO:GO:0006821	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0019538	GO:GO:0034220
GO:GO:0055085	GO:GO:1902476	InterPro:IPR011990	InterPro:IPR014743	PFAM:PF00654	PRINTS:PR00762
PANTHER:PTHR43427	PANTHER:PTHR43427:SF2	SUPFAM:SSF48452	SUPFAM:SSF81340	TMHMM:TMhelix	InterPro:TPR-like_helical_dom_sf
UniParc:UPI00084368C0	EnsemblPlantsGene:Zm00001d051050	EnsemblPlants:Zm00001d051050_P001	EnsemblPlants:Zm00001d051050_T001	SEG:seg	:

Description

Putative eukaryotic translation initiation factor 3E subunit family protein

Coordinates

chr4:+:138717970..138721215

Molecular Weight (calculated)

40722.8 Da

IEP (calculated)

7.996

GRAVY (calculated)

0.353

Length

368 amino acids

Sequence
(BLAST)

001: MLCGAVSVVF DRLVGWFSRF FGHIKEKFDF PIIVYPALGG LGAGIIALKY PGILYWGFTN VEEILHTGKS ASAPGIWLLT QLTAAKVVAT ALCKGSGLVG
101: GLYAPSLMIG AAVGAVFGDS AAYLINSSLP GNAAVAQPQA YALVGMAATL ASVCSVPLTS VLLLFELTKD YRILLPLMKL CTEKLQCPYD TTTIGPDQIE
201: ALYQYAKFQF ECGNYSGAAD YLYQYGALCT NSERNVSALW GKLAAEILMQ NWDLALEELN RLKEIIDSKN FSSPLNQLQN RIWLMHWALF IFFNHIRYLN
301: AIQTNAHHLI RYLATAVVVH KRRRNMLKEL IKVIQQEHHS YKDPVTEFLE CLYVNYVVVG FGTITGVI

Best Arabidopsis Sequence Match ( AT1G55620.1 )
(BLAST)

001: MMHGLLEILD QIRQSNSSQR QGLDFLAGIY PVIKAIQAAV TLGTGCSLGP EGPSVDIGKS CANGFALMME NNRERRIALT AAGAASGIAS GFNAAVAGCF
101: FAIETVLRPL RAENSPPFTT AMIILASVIS STVSNALLGT QSAFTVPSYD LKSAAELPLY LILGMLCGAV SVVFSRLVTW FTKSFDFIKD KFGLPAIVCP
201: ALGGLGAGII ALKYPGILYW GFTNVEEILH TGKSASAPGI WLLAQLAAAK VVATALCKGS GLVGGLYAPS LMIGAAVGAV FGGSAAEIIN RAIPGNAAVA
301: QPQAYALVGM AATLASMCSV PLTSVLLLFE LTKDYRILLP LMGAVGLAIW VPSVANQGKE SDSSEGRSTG RGYSSLSPSE RKTEGVWRHT DNADSLELTV
401: IENPDHNSFL DEETILEDLK VMRVMSKNYV KVSSGTTLRE ARNILKESHQ NCIMVVDDDD FLAGILTHGD IRRYLSNNAS TILDENTCPV SSVCTKKISY
501: RGQERGLLTC YPDATVGVAK ELMEARGVKQ LPVVKRGEVI HKGKRRKLLG LLHYDSIWTF LRDEMSRRRS INDRRKDKEV GTNGH

Arabidopsis Description

CLC-FChloride channel protein CLC-f [Source:UniProtKB/Swiss-Prot;Acc:Q8RXR2]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.