CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX72169
CDX90073
CDY00413
CDY01302
CDY15130
CDY16358
CDY27241
CDY38053
CDY65406

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G57290.1	CDX90073	AT1G02090.1	11029466
AT3G57290.1	CDY00413	AT1G02090.1	11029466
AT3G57290.1	CDY01302	AT1G02090.1	11029466
AT3G57290.1	CDY15130	AT1G02090.1	11029466
AT3G57290.1	CDY38053	AT1G02090.1	11029466
AT3G57290.1	CDX72169	AT3G56150.1	11029466
AT3G57290.1	CDY16358	AT3G56150.1	11029466
AT3G57290.1	CDY27241	AT3G56150.1	11029466
AT3G57290.1	CDY65406	AT3G56150.1	11029466

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX88939	Canola	cytosol	99.32	99.32
Bra014633.1-P	Field mustard	cytosol	99.09	99.09
CDY06117	Canola	cytosol	96.6	96.6
CDX72053	Canola	cytosol	95.46	95.46
AT3G57290.1	Thale cress	cytosol	93.42	93.42
PGSC0003DMT400076704	Potato	cytosol	82.09	82.65
Solyc10g079880.1.1	Tomato	cytosol, nucleus	81.86	82.42
Zm00001d029511_P001	Maize	vacuole	30.61	73.77
GSMUA_Achr7P21330_001	Banana	cytosol	73.02	73.18
CDY19244	Canola	extracellular	7.26	72.73
Zm00001d005238_P001	Maize	plasma membrane	71.43	72.25
KXG34696	Sorghum	cytosol	71.66	71.98
Zm00001d019182_P001	Maize	cytosol	70.29	71.1
Zm00001d029828_P001	Maize	cytosol	22.68	70.42
Os07t0222300-01	Rice	cytosol, plasma membrane	67.8	68.11
TraesCS5A01G261900.1	Wheat	cytosol	67.35	67.35
TraesCS5B01G260000.2	Wheat	cytosol, golgi, unclear	67.35	67.35
TraesCS5D01G269200.1	Wheat	cytosol	67.35	67.35
Zm00001d040830_P001	Maize	cytosol	30.84	66.02
Os07t0167000-01	Rice	cytosol	60.09	63.86
HORVU5Hr1G072560.1	Barley	cytosol	66.67	62.55
Os07t0503700-00	Rice	cytosol, plasma membrane	56.46	57.77
Zm00001d020479_P005	Maize	cytosol	17.46	54.23
Zm00001d029554_P001	Maize	plasma membrane, plastid	31.29	51.69
Zm00001d014873_P001	Maize	plasma membrane, plastid	30.84	50.94
Zm00001d010441_P001	Maize	cytosol	12.02	50.48
CDY70248	Canola	cytosol	33.11	49.32
Zm00001d051103_P004	Maize	plasma membrane	23.58	49.29
Zm00001d020635_P001	Maize	mitochondrion	24.72	47.39
CDY70454	Canola	mitochondrion	10.88	44.86
Zm00001d051050_P001	Maize	plasma membrane	34.24	41.03
Zm00001d031414_P001	Maize	cytosol	14.97	37.29
Zm00001d020588_P001	Maize	plasma membrane	13.61	33.33
CDX79391	Canola	cytosol, extracellular, nucleus	12.24	24.32
CDY19243	Canola	cytosol	6.35	16.0

Protein Annotations

Gene3D:1.25.40.570	MapMan:17.4.1.3.5	GO:A0A078H2A9	UniProt:A0A078H2A9	EnsemblPlants:CDY30993	ProteinID:CDY30993
ProteinID:CDY30993.1	GO:GO:0001731	GO:GO:0001732	GO:GO:0002183	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003743	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005852	GO:GO:0006412	GO:GO:0006413	GO:GO:0006446	GO:GO:0008135
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0016282
GO:GO:0019538	GO:GO:0033290	GO:GO:0071540	EnsemblPlantsGene:GSBRNA2T00047029001	InterPro:IPR000717	HAMAP:MF_03004
InterPro:PCI_dom	PFAM:PF01399	PFAM:PF09440	PIRSF:PIRSF016255	PFscan:PS50250	PANTHER:PTHR10317
PANTHER:PTHR10317:SF0	SMART:SM00088	SMART:SM00753	SMART:SM01186	SUPFAM:SSF46785	UniParc:UPI0004EDAFB6
InterPro:WH_DNA-bd_sf	InterPro:eIF3e	InterPro:eIF3e_N	:	:	:

Description

BnaC04g24310DEukaryotic translation initiation factor 3 subunit E [Source:UniProtKB/TrEMBL;Acc:A0A078H2A9]

Coordinates

chrLK032265:-:313919..316887

Molecular Weight (calculated)

51737.1 Da

IEP (calculated)

5.529

GRAVY (calculated)

-0.408

Length

441 amino acids

Sequence
(BLAST)

001: MEETKENYDL TPRVAPNLDR HLVFPILEFL QERQLYPDEQ ILKFKIELLN KTNMVDYAMD IHKSLYHTED APQDMVERRA EVVARLKSLE EAAAPLVTFL
101: LNPNAVQELR ADKQYNLQML KERYQIGPDQ IEALYQYAKF QFECGNYSGA ADYLYQYRTL CSNLERSLSA LWGKLASEIL MQNWDIALEE LNRVKEIIDS
201: KSFASPLNQV QNRIWLMHWG LYIFFNHDNG RTQIIDLFIQ DKYMNAIQTS APHLLRYLAT AFIVNKRRRP QLKEFIKVIQ QEHYSYKDPI VEFLACVFVN
301: YDFDGAQKKM KECEEVIVND PFLGKRVDDG NFSTVPLKDE FLENARLFIF ETYCRIHQRI DMGVLAEKLD LKYEEAERWI VNLIRTSKLD AKIDSESGTV
401: IMEPTQPNVH EQLVNHTKAL SGRTYKLVTQ LLEYSQGQAA R

Best Arabidopsis Sequence Match ( AT3G57290.1 )
(BLAST)

001: MEESKQNYDL TPLIAPNLDR HLVFPIFEFL QERQLYPDEQ ILKSKIQLLN QTNMVDYAMD IHKSLYHTED APQEMVERRT EVVARLKSLE EAAAPLVSFL
101: LNPNAVQELR ADKQYNLQML KERYQIGPDQ IEALYQYAKF QFECGNYSGA ADYLYQYRTL CSNLERSLSA LWGKLASEIL MQNWDIALEE LNRLKEIIDS
201: KSFSSPLNQV QNRIWLMHWG LYIFFNHDNG RTQIIDLFNQ DKYLNAIQTS APHLLRYLAT AFIVNKRRRP QLKEFIKVIQ QEHYSYKDPI IEFLACVFVN
301: YDFDGAQKKM KECEEVIVND PFLGKRVEDG NFSTVPLRDE FLENARLFVF ETYCKIHQRI DMGVLAEKLN LNYEEAERWI VNLIRTSKLD AKIDSESGTV
401: IMEPTQPNVH EQLINHTKGL SGRTYKLVNQ LLEHTQAQAT R

Arabidopsis Description

TIF3E1Eukaryotic translation initiation factor 3 subunit E [Source:UniProtKB/TrEMBL;Acc:A0A178VL03]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.