Factsheet for TraesCS5A01G261900.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, secretory
iPSORT:	secretory
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G228300.1
TraesCS2B01G253600.2
TraesCS2D01G239100.1
TraesCS5A01G220000.1
TraesCS5A01G406000.1
TraesCS5B01G219100.1
TraesCS5B01G410800.1
TraesCS5D01G228100.1
TraesCS5D01G416000.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G57290.1	TraesCS2A01G228300.1	AT1G02090.1	11029466
AT3G57290.1	TraesCS2B01G253600.2	AT1G02090.1	11029466
AT3G57290.1	TraesCS2D01G239100.1	AT1G02090.1	11029466
AT3G57290.1	TraesCS5A01G220000.1	AT3G56150.1	11029466
AT3G57290.1	TraesCS5A01G406000.1	AT3G56150.1	11029466
AT3G57290.1	TraesCS5B01G219100.1	AT3G56150.1	11029466
AT3G57290.1	TraesCS5B01G410800.1	AT3G56150.1	11029466
AT3G57290.1	TraesCS5D01G228100.1	AT3G56150.1	11029466
AT3G57290.1	TraesCS5D01G416000.1	AT3G56150.1	11029466

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G269200.1	Wheat	cytosol	99.77	99.77
TraesCS5B01G260000.2	Wheat	cytosol, golgi, unclear	99.77	99.77
HORVU5Hr1G072560.1	Barley	cytosol	98.87	92.77
KXG34696	Sorghum	cytosol	81.63	82.0
Zm00001d019182_P001	Maize	cytosol	80.95	81.88
Zm00001d005238_P001	Maize	plasma membrane	80.05	80.96
Os07t0222300-01	Rice	cytosol, plasma membrane	80.5	80.87
Zm00001d029828_P001	Maize	cytosol	25.85	80.28
Zm00001d029511_P001	Maize	vacuole	31.07	74.86
GSMUA_Achr7P21330_001	Banana	cytosol	73.92	74.09
KRH33198	Soybean	endoplasmic reticulum	70.98	71.62
KRH72039	Soybean	endoplasmic reticulum	70.52	71.17
Os07t0167000-01	Rice	cytosol	66.21	70.36
VIT_00s0252g00070.t01	Wine grape	cytosol	69.39	70.02
AT3G57290.1	Thale cress	cytosol	68.25	68.25
CDY19244	Canola	extracellular	6.8	68.18
Bra007317.1-P	Field mustard	cytosol	68.03	68.03
CDY06117	Canola	cytosol	68.03	68.03
Solyc10g079880.1.1	Tomato	cytosol, nucleus	67.35	67.81
CDX88939	Canola	cytosol	67.57	67.57
CDX72053	Canola	cytosol	67.57	67.57
Zm00001d040830_P001	Maize	cytosol	31.52	67.48
PGSC0003DMT400076704	Potato	cytosol	66.89	67.35
CDY30993	Canola	cytosol	67.35	67.35
Bra014633.1-P	Field mustard	cytosol	67.35	67.35
Zm00001d020479_P005	Maize	cytosol	21.54	66.9
Os07t0503700-00	Rice	cytosol, plasma membrane	64.63	66.13
Zm00001d029554_P001	Maize	plasma membrane, plastid	31.97	52.81
Zm00001d014873_P001	Maize	plasma membrane, plastid	31.52	52.06
Zm00001d051103_P004	Maize	plasma membrane	23.81	49.76
Zm00001d020635_P001	Maize	mitochondrion	25.85	49.57
Bra034326.1-P	Field mustard	cytosol	23.58	45.22
Zm00001d051050_P001	Maize	plasma membrane	34.92	41.85
CDY70248	Canola	cytosol	25.85	38.51
Zm00001d031414_P001	Maize	cytosol	14.97	37.29
CDY70454	Canola	mitochondrion	8.62	35.51
CDX79391	Canola	cytosol, extracellular, nucleus	9.75	19.37
CDY19243	Canola	cytosol	5.9	14.86

Protein Annotations

Gene3D:1.25.40.570	MapMan:17.4.1.3.5	ncoils:Coil	GO:GO:0000003	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003729	GO:GO:0003743	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005829	GO:GO:0005852	GO:GO:0005886
GO:GO:0006412	GO:GO:0006950	GO:GO:0007275	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009628	GO:GO:0009640	GO:GO:0009651	GO:GO:0009791	GO:GO:0009908
GO:GO:0009987	GO:GO:0016020	GO:GO:0019538	GO:GO:0030371	GO:GO:0031597	GO:GO:0045182
InterPro:IPR000717	HAMAP:MF_03004	InterPro:PCI_dom	PFAM:PF01399	PFAM:PF09440	PIRSF:PIRSF016255
PFscan:PS50250	PANTHER:PTHR10317	PANTHER:PTHR10317:SF0	SMART:SM00088	SMART:SM00753	SMART:SM01186
SUPFAM:SSF46785	EnsemblPlantsGene:TraesCS5A01G261900	EnsemblPlants:TraesCS5A01G261900.1	InterPro:WH_DNA-bd_sf	InterPro:eIF3e	InterPro:eIF3e_N

Description

No Description!

Coordinates

chr5A:-:475466582..475467907

Molecular Weight (calculated)

50722.1 Da

IEP (calculated)

5.328

GRAVY (calculated)

-0.192

Length

441 amino acids

Sequence
(BLAST)

001: MAEHDLTASV AAWMDPHLVL PVLEFLQERG VYADEEILRG KIRLLGGTNM VDYAMDIHKS LHGTDDVPAD MVARRSEVVE RLRALQEAVA PIVAFLSSPQ
101: LVQELHADKQ YNLHMLQERH QIGPDQIEAL YQYAKFQYEC GMYSDAADFL SQYRALCTNS ERSLSALWGK LAAEILMQNW DVAQEELNRL KEMIDSSSFT
201: SSPVNQLHSR IWLMHWSLFI FFNHENGRNG IIDLFFQDRY LNAIQTNAPH LLRYLAAAVV VNKRRRNMLK ELIKVIQQEQ NSYKDPIIEF LECLYVKYDF
301: DGAQQKLVEC EQVILNDPFL GKRVEERNGI AVPLRDEFLE NARLFIFETY CRIHRCIDIG VLAEKLNMTY DEAELWIMNM VKSSKLDAKI DSVTGTLIMT
401: TNCVDVHEQI IESMKNLNAR TYMLAKSVVD PGHAAAQQAA R

Best Arabidopsis Sequence Match ( AT3G57290.1 )
(BLAST)

001: MEESKQNYDL TPLIAPNLDR HLVFPIFEFL QERQLYPDEQ ILKSKIQLLN QTNMVDYAMD IHKSLYHTED APQEMVERRT EVVARLKSLE EAAAPLVSFL
101: LNPNAVQELR ADKQYNLQML KERYQIGPDQ IEALYQYAKF QFECGNYSGA ADYLYQYRTL CSNLERSLSA LWGKLASEIL MQNWDIALEE LNRLKEIIDS
201: KSFSSPLNQV QNRIWLMHWG LYIFFNHDNG RTQIIDLFNQ DKYLNAIQTS APHLLRYLAT AFIVNKRRRP QLKEFIKVIQ QEHYSYKDPI IEFLACVFVN
301: YDFDGAQKKM KECEEVIVND PFLGKRVEDG NFSTVPLRDE FLENARLFVF ETYCKIHQRI DMGVLAEKLN LNYEEAERWI VNLIRTSKLD AKIDSESGTV
401: IMEPTQPNVH EQLINHTKGL SGRTYKLVNQ LLEHTQAQAT R

Arabidopsis Description

TIF3E1Eukaryotic translation initiation factor 3 subunit E [Source:UniProtKB/TrEMBL;Acc:A0A178VL03]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.