Factsheet for Zm00001d029554_P001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid

Predictor Summary:

plastid 3
peroxisome 1
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane, plastid
Any Predictor:	mitochondrion, peroxisome, plastid, secretory
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	peroxisome
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d002166_P004
Zm00001d002169_P006
Zm00001d002737_P002
Zm00001d004607_P001
Zm00001d006410_P013
Zm00001d020231_P001
Zm00001d020935_P002
Zm00001d021522_P002
Zm00001d023916_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G57290.1	Zm00001d004607_P001	AT1G02090.1	11029466
AT3G57290.1	Zm00001d006410_P013	AT1G02090.1	11029466
AT3G57290.1	Zm00001d020231_P001	AT1G02090.1	11029466
AT3G57290.1	Zm00001d021522_P002	AT1G02090.1	11029466
AT3G57290.1	Zm00001d023916_P001	AT1G02090.1	11029466
AT3G57290.1	Zm00001d002166_P004	AT3G56150.1	11029466
AT3G57290.1	Zm00001d002169_P006	AT3G56150.1	11029466
AT3G57290.1	Zm00001d002737_P002	AT3G56150.1	11029466
AT3G57290.1	Zm00001d020935_P002	AT3G56150.1	11029466

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d014873_P001	Maize	plasma membrane, plastid	99.25	99.25
Zm00001d029511_P001	Maize	vacuole	62.92	91.8
Zm00001d029828_P001	Maize	cytosol	37.83	71.13
CDY19244	Canola	extracellular	10.86	65.91
Zm00001d020635_P001	Maize	mitochondrion	51.31	59.57
Zm00001d051103_P004	Maize	plasma membrane	42.32	53.55
Zm00001d010441_P001	Maize	cytosol	19.85	50.48
Zm00001d020479_P005	Maize	cytosol	25.84	48.59
Zm00001d051050_P001	Maize	plasma membrane	66.67	48.37
Zm00001d020588_P001	Maize	plasma membrane	28.09	41.67
Zm00001d040830_P001	Maize	cytosol	29.59	38.35
Zm00001d005238_P001	Maize	plasma membrane	61.05	37.39
Zm00001d019182_P001	Maize	cytosol	58.05	35.55
GSMUA_Achr7P21330_001	Banana	cytosol	58.05	35.23
PGSC0003DMT400076704	Potato	cytosol	54.31	33.1
KRH33198	Soybean	endoplasmic reticulum	53.93	32.95
Solyc10g079880.1.1	Tomato	cytosol, nucleus	53.93	32.88
KRH72039	Soybean	endoplasmic reticulum	53.18	32.49
AT3G57290.1	Thale cress	cytosol	52.81	31.97
TraesCS5A01G261900.1	Wheat	cytosol	52.81	31.97
TraesCS5B01G260000.2	Wheat	cytosol, golgi, unclear	52.81	31.97
TraesCS5D01G269200.1	Wheat	cytosol	52.81	31.97
VIT_00s0252g00070.t01	Wine grape	cytosol	52.06	31.81
Zm00001d031414_P001	Maize	cytosol	20.97	31.64
CDY30993	Canola	cytosol	51.69	31.29
Bra014633.1-P	Field mustard	cytosol	51.69	31.29
CDX88939	Canola	cytosol	51.69	31.29
CDY06117	Canola	cytosol	50.94	30.84
Bra007317.1-P	Field mustard	cytosol	50.94	30.84
CDX72053	Canola	cytosol	50.56	30.61
HORVU5Hr1G072560.1	Barley	cytosol	52.81	30.0
Bra034326.1-P	Field mustard	cytosol	20.6	23.91
CDY70248	Canola	cytosol	20.6	18.58
CDX79391	Canola	cytosol, extracellular, nucleus	14.61	17.57
CDY19243	Canola	cytosol	7.87	12.0
CDY70454	Canola	mitochondrion	4.49	11.21

Protein Annotations

MapMan:17.4.1.3.5	UniProt:A0A1D6K5Y4	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003743
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005852	GO:GO:0006412	GO:GO:0006413	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	InterPro:IPR011990	ProteinID:ONL98982.1	PANTHER:PTHR10317
PANTHER:PTHR10317:SF0	SUPFAM:SSF48452	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0008438C54	EnsemblPlantsGene:Zm00001d029554	EnsemblPlants:Zm00001d029554_P001
EnsemblPlants:Zm00001d029554_T001	InterPro:eIF3e	:	:	:	:

Description

Eukaryotic translation initiation factor 3 subunit E

Coordinates

chr1:-:76022397..76025899

Molecular Weight (calculated)

30476.8 Da

IEP (calculated)

7.842

GRAVY (calculated)

-0.097

Length

267 amino acids

Sequence
(BLAST)

001: MAFGPKFLIP FTPAVLVQPW SHGGGTPSCL AVSESPLFRA ADVLQWSLPL PLCVGHLNCN AQSRAQIVSS HSQIQPLRIW PGNNTPCTHA PHEGKEPIQI
101: GPDQIEALYQ YAKFQFECGN YSGAADYLYQ YGALCTNSER NVSALWGKLA AEILMQNWDL ALEELNRLKE IIDSKNFSSP LNQLQNRIWL MHWALFIFFN
201: HIRYLNAIQT NAHHLIRYLA TAVVVNKRRR NMLKELIKVI QQEHHTYKDP ITEFLECLYV NYVVVGF

Best Arabidopsis Sequence Match ( AT3G57290.1 )
(BLAST)

001: MEESKQNYDL TPLIAPNLDR HLVFPIFEFL QERQLYPDEQ ILKSKIQLLN QTNMVDYAMD IHKSLYHTED APQEMVERRT EVVARLKSLE EAAAPLVSFL
101: LNPNAVQELR ADKQYNLQML KERYQIGPDQ IEALYQYAKF QFECGNYSGA ADYLYQYRTL CSNLERSLSA LWGKLASEIL MQNWDIALEE LNRLKEIIDS
201: KSFSSPLNQV QNRIWLMHWG LYIFFNHDNG RTQIIDLFNQ DKYLNAIQTS APHLLRYLAT AFIVNKRRRP QLKEFIKVIQ QEHYSYKDPI IEFLACVFVN
301: YDFDGAQKKM KECEEVIVND PFLGKRVEDG NFSTVPLRDE FLENARLFVF ETYCKIHQRI DMGVLAEKLN LNYEEAERWI VNLIRTSKLD AKIDSESGTV
401: IMEPTQPNVH EQLINHTKGL SGRTYKLVNQ LLEHTQAQAT R

Arabidopsis Description

TIF3E1Eukaryotic translation initiation factor 3 subunit E [Source:UniProtKB/TrEMBL;Acc:A0A178VL03]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.