Factsheet for Zm00001d051103_P004

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 2
extracellular 4
endoplasmic reticulum 3
vacuole 3
plasma membrane 5
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	plastid, secretory
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	plasma membrane
Predotar:	plastid
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d002166_P004
Zm00001d002169_P006
Zm00001d002737_P002
Zm00001d004607_P001
Zm00001d006410_P013
Zm00001d020231_P001
Zm00001d020935_P002
Zm00001d021522_P002
Zm00001d023916_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G57290.1	Zm00001d004607_P001	AT1G02090.1	11029466
AT3G57290.1	Zm00001d006410_P013	AT1G02090.1	11029466
AT3G57290.1	Zm00001d020231_P001	AT1G02090.1	11029466
AT3G57290.1	Zm00001d021522_P002	AT1G02090.1	11029466
AT3G57290.1	Zm00001d023916_P001	AT1G02090.1	11029466
AT3G57290.1	Zm00001d002166_P004	AT3G56150.1	11029466
AT3G57290.1	Zm00001d002169_P006	AT3G56150.1	11029466
AT3G57290.1	Zm00001d002737_P002	AT3G56150.1	11029466
AT3G57290.1	Zm00001d020935_P002	AT3G56150.1	11029466

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY19244	Canola	extracellular	14.22	68.18
Zm00001d029511_P001	Maize	vacuole	50.71	58.47
Zm00001d029554_P001	Maize	plasma membrane, plastid	53.55	42.32
Zm00001d014873_P001	Maize	plasma membrane, plastid	52.61	41.57
Zm00001d040830_P001	Maize	cytosol	36.97	37.86
Zm00001d029828_P001	Maize	cytosol	24.64	36.62
Zm00001d020635_P001	Maize	mitochondrion	35.55	32.61
Zm00001d051050_P001	Maize	plasma membrane	55.92	32.07
Zm00001d005238_P001	Maize	plasma membrane	57.35	27.75
Zm00001d031414_P001	Maize	cytosol	22.75	27.12
GSMUA_Achr7P21330_001	Banana	cytosol	55.45	26.59
Zm00001d019182_P001	Maize	cytosol	54.03	26.15
Solyc10g079880.1.1	Tomato	cytosol, nucleus	54.03	26.03
PGSC0003DMT400076704	Potato	cytosol	54.03	26.03
VIT_00s0252g00070.t01	Wine grape	cytosol	53.08	25.63
KRH33198	Soybean	endoplasmic reticulum	52.61	25.4
KRH72039	Soybean	endoplasmic reticulum	52.61	25.4
Zm00001d020588_P001	Maize	plasma membrane	20.85	24.44
AT3G57290.1	Thale cress	cytosol	50.24	24.04
TraesCS5A01G261900.1	Wheat	cytosol	49.76	23.81
TraesCS5B01G260000.2	Wheat	cytosol, golgi, unclear	49.76	23.81
TraesCS5D01G269200.1	Wheat	cytosol	49.76	23.81
CDY30993	Canola	cytosol	49.29	23.58
Bra014633.1-P	Field mustard	cytosol	49.29	23.58
CDX88939	Canola	cytosol	49.29	23.58
CDY06117	Canola	cytosol	48.82	23.36
Bra007317.1-P	Field mustard	cytosol	48.82	23.36
CDX72053	Canola	cytosol	48.34	23.13
HORVU5Hr1G072560.1	Barley	cytosol	49.76	22.34
Bra034326.1-P	Field mustard	cytosol	23.7	21.74
Zm00001d020479_P005	Maize	cytosol	13.27	19.72
CDY70248	Canola	cytosol	25.12	17.91
CDY70454	Canola	mitochondrion	7.58	14.95
CDX79391	Canola	cytosol, extracellular, nucleus	15.64	14.86
Zm00001d010441_P001	Maize	cytosol	5.69	11.43
CDY19243	Canola	cytosol	5.69	6.86

Protein Annotations

Gene3D:1.10.3080.10	MapMan:35.1	UniProt:A0A1D6Q4Y6	ProteinID:AQK53635.1	InterPro:Cl-channel_core	InterPro:Cl-channel_volt-gated
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003743	GO:GO:0005215	GO:GO:0005216
GO:GO:0005247	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005852	GO:GO:0006412	GO:GO:0006413	GO:GO:0006810	GO:GO:0006821
GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	GO:GO:0019538	GO:GO:0034220	GO:GO:0055085	GO:GO:1902476	InterPro:IPR011990
InterPro:IPR014743	PFAM:PF00654	PANTHER:PTHR10317	PANTHER:PTHR10317:SF0	SUPFAM:SSF48452	SUPFAM:SSF81340
TMHMM:TMhelix	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0008429029	EnsemblPlantsGene:Zm00001d051103	EnsemblPlants:Zm00001d051103_P004	EnsemblPlants:Zm00001d051103_T004
InterPro:eIF3e	:	:	:	:	:

Description

Eukaryotic translation initiation factor 3 subunit E

Coordinates

chr4:+:142662758..142671086

Molecular Weight (calculated)

23924.5 Da

IEP (calculated)

6.916

GRAVY (calculated)

0.472

Length

211 amino acids

Sequence
(BLAST)

001: MIILASVISS TVSNVLLGAR PAFIVPAYEL KSAAGLTFLV GMAATLASVC SVPLTSVLLL FELTKDYRIL LPLMIGLDQI EALYQYAQFQ FECGNYSGAA
101: DYLYQYGALC TNSERNVSAL WGKLAAEILM QNWDLALEEL NRLKEIIDSK LQNRIWLMHW ALFIFFNHIR YLNAIQTNAH HLIRPIKFII LNTPKCNFAF
201: SYNLFQVELT M

Best Arabidopsis Sequence Match ( AT3G57290.1 )
(BLAST)

001: MEESKQNYDL TPLIAPNLDR HLVFPIFEFL QERQLYPDEQ ILKSKIQLLN QTNMVDYAMD IHKSLYHTED APQEMVERRT EVVARLKSLE EAAAPLVSFL
101: LNPNAVQELR ADKQYNLQML KERYQIGPDQ IEALYQYAKF QFECGNYSGA ADYLYQYRTL CSNLERSLSA LWGKLASEIL MQNWDIALEE LNRLKEIIDS
201: KSFSSPLNQV QNRIWLMHWG LYIFFNHDNG RTQIIDLFNQ DKYLNAIQTS APHLLRYLAT AFIVNKRRRP QLKEFIKVIQ QEHYSYKDPI IEFLACVFVN
301: YDFDGAQKKM KECEEVIVND PFLGKRVEDG NFSTVPLRDE FLENARLFVF ETYCKIHQRI DMGVLAEKLN LNYEEAERWI VNLIRTSKLD AKIDSESGTV
401: IMEPTQPNVH EQLINHTKGL SGRTYKLVNQ LLEHTQAQAT R

Arabidopsis Description

TIF3E1Eukaryotic translation initiation factor 3 subunit E [Source:UniProtKB/TrEMBL;Acc:A0A178VL03]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.