Factsheet for Os07t0490800-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plasma membrane
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
YLoc:	cytosol

plasma membrane: 28056797

msms PMID: 28056797 doi

N Yang, T Wang

Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China., Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China. twang@ibcas.ac.cn.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os03t0116500-01
Os03t0197400-01
Os04t0428900-01
Os04t0654700-02
Os07t0167000-01
Os07t0222300-01
Os07t0503700-00
Os08t0119000-01
Os08t0500000-01
Os10t0569200-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G02090.1	Os04t0654700-02	AT1G71230.1	11742986
AT1G02090.1	Os07t0167000-01	AT3G57290.1	11029466
AT1G02090.1	Os07t0222300-01	AT3G57290.1	11029466
AT1G02090.1	Os07t0503700-00	AT3G57290.1	11029466
AT1G02090.1	Os03t0116500-01	AT3G61140.1	10330469
AT1G02090.1	Os03t0116500-01	AT3G61140.1	11742986
AT1G02090.1	Os03t0116500-01	AT3G61140.1	12615944
AT1G02090.1	Os04t0428900-01	AT4G14110.1	10330469
AT1G02090.1	Os04t0428900-01	AT4G14110.1	12615944
AT1G02090.1	Os08t0500000-01	AT4G26430.1	11742986
AT1G02090.1	Os08t0119000-01	AT5G14250.1	11742986
AT1G02090.1	Os08t0119000-01	AT5G14250.1	12615944
AT1G02090.1	Os10t0569200-01	AT5G25780.1	11029466
AT1G02090.1	Os03t0197400-01	AT5G42970.1	11854419
AT1G02090.1	Os03t0197400-01	AT5G42970.1	12615944
AT1G02090.1	Os08t0500000-01	AT5G56280.1	11701877
AT1G02090.1	Os08t0500000-01	AT5G56280.1	11742986
AT1G02090.1	Os08t0500000-01	AT5G56280.1	12615944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d023916_P001	Maize	cytosol	29.75	76.6
Zm00001d020231_P001	Maize	cytosol	42.15	75.0
CDX90073	Canola	cytosol	30.58	59.68
Zm00001d004607_P001	Maize	nucleus	64.46	47.27
Bra033219.1-P	Field mustard	cytosol	30.58	38.95
KXG36255	Sorghum	nucleus	81.82	37.93
Zm00001d006410_P013	Maize	nucleus	80.99	37.55
TraesCS2D01G239100.1	Wheat	golgi	80.17	37.16
TraesCS2A01G228300.1	Wheat	nucleus	79.34	36.78
TraesCS2B01G253600.2	Wheat	nucleus	79.34	36.78
HORVU2Hr1G050230.9	Barley	nucleus	78.51	36.4
Zm00001d021522_P002	Maize	cytosol, plasma membrane	78.51	34.17
GSMUA_Achr2P12070_001	Banana	cytosol	73.55	34.1
CDY15130	Canola	extracellular	31.41	33.93
GSMUA_Achr4P21630_001	Banana	cytosol	70.25	32.82
KRH13242	Soybean	cytosol	68.59	32.05
VIT_15s0021g01580.t01	Wine grape	cytosol	67.77	31.66
KRH20583	Soybean	cytosol	66.94	31.27
Solyc01g090290.2.1	Tomato	cytosol	64.46	30.12
Bra012303.1-P	Field mustard	nucleus	61.98	28.85
AT1G02090.1	Thale cress	cytosol	61.16	28.46
CDY01302	Canola	nucleus	61.16	28.46
CDY00413	Canola	cytosol	61.16	28.46
CDY38053	Canola	cytosol	60.33	27.86
Bra032666.1-P	Field mustard	cytoskeleton, cytosol, nucleus	59.5	27.48
PGSC0003DMT400067022	Potato	cytosol	64.46	26.35
KRH01071	Soybean	nucleus	59.5	25.62
VIT_02s0234g00120.t01	Wine grape	cytosol	50.41	23.55

Protein Annotations

EnsemblPlants:Os07t0490800-01	EnsemblPlantsGene:Os07g0490800	Gene3D:1.25.40.570	GO:GO:0000338	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0008180
GO:GO:0009987	GO:GO:0019538	PANTHER:PTHR15350	PANTHER:PTHR15350:SF5	ProteinID:BAF21592.1	ProteinID:BAT01554.1
UniParc:UPI0000E12B19	UniProt:Q0D6D1	MapMan:19.2.3.3.1.7	:	:	:

Description

Similar to COP9 signalosome complex subunit 7 (CSN complex subunit 7) (FUSCA protein 5) (FUSCA5). (Os07t0490800-01)

Coordinates

chr7:-:18253700..18256000

Molecular Weight (calculated)

14090.7 Da

IEP (calculated)

4.804

GRAVY (calculated)

-0.713

Length

121 amino acids

Sequence
(BLAST)

001: VRELEDFLIN ECMYSGIVRG KLDQLRRCFE VQFATGRDLT PDQLNNMIDT LSDWLGTSDN LLHQIQEKIK WADTMSEVNK KHQKEFEDKV EEAKKSIKLN
101: NLSRQTSTYG GMTTFSLNLE E

Best Arabidopsis Sequence Match ( AT1G02090.3 )
(BLAST)

001: MDIEQKQAEI IDQLVKRAST CKSEALGPLI IEATSHPSLF AFSEILALPN VAQLEGTTDS VYLDLLRLFA HGTWGDYKCN ATRLPHLSPD QILKLKQLTV
101: LTLAESNKVL PYDTLMVELD VSNVRELEDF LINECMYAGI VRGKLDQLKR CFEVPFAAGR DLRPGQLGNM LHTLSNWLNT SENLLISIQD KIKWADNMSE
201: MDKKHRKEAE EGVEEVKKSL SMKVSRAWSP IGFTFPY

Arabidopsis Description

CSN7COP9 signalosome complex subunit 7 [Source:UniProtKB/Swiss-Prot;Acc:Q94JU3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.