Factsheet for PGSC0003DMT400067022

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, peroxisome, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400004200
PGSC0003DMT400013225
PGSC0003DMT400023896
PGSC0003DMT400052100
PGSC0003DMT400056930
PGSC0003DMT400069203
PGSC0003DMT400071374
PGSC0003DMT400076584
PGSC0003DMT400076704

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G02090.1	PGSC0003DMT400023896	AT1G71230.1	11742986
AT1G02090.1	PGSC0003DMT400069203	AT1G71230.1	11742986
AT1G02090.1	PGSC0003DMT400076704	AT3G57290.1	11029466
AT1G02090.1	PGSC0003DMT400071374	AT3G61140.1	10330469
AT1G02090.1	PGSC0003DMT400071374	AT3G61140.1	11742986
AT1G02090.1	PGSC0003DMT400071374	AT3G61140.1	12615944
AT1G02090.1	PGSC0003DMT400076584	AT4G14110.1	10330469
AT1G02090.1	PGSC0003DMT400076584	AT4G14110.1	12615944
AT1G02090.1	PGSC0003DMT400056930	AT4G26430.1	11742986
AT1G02090.1	PGSC0003DMT400052100	AT5G14250.1	11742986
AT1G02090.1	PGSC0003DMT400052100	AT5G14250.1	12615944
AT1G02090.1	PGSC0003DMT400004200	AT5G25780.1	11029466
AT1G02090.1	PGSC0003DMT400013225	AT5G42970.1	11854419
AT1G02090.1	PGSC0003DMT400013225	AT5G42970.1	12615944
AT1G02090.1	PGSC0003DMT400056930	AT5G56280.1	11701877
AT1G02090.1	PGSC0003DMT400056930	AT5G56280.1	11742986
AT1G02090.1	PGSC0003DMT400056930	AT5G56280.1	12615944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g090290.2.1	Tomato	cytosol	83.45	95.37
VIT_15s0021g01580.t01	Wine grape	cytosol	72.3	82.63
Zm00001d023916_P001	Maize	cytosol	12.84	80.85
KRH13242	Soybean	cytosol	69.59	79.54
CDX90073	Canola	cytosol	16.55	79.03
KRH20583	Soybean	cytosol	67.91	77.61
Zm00001d020231_P001	Maize	cytosol	17.57	76.47
AT1G02090.1	Thale cress	cytosol	64.53	73.46
CDY38053	Canola	cytosol	63.51	71.76
Bra033219.1-P	Field mustard	cytosol	22.97	71.58
Bra032666.1-P	Field mustard	cytoskeleton, cytosol, nucleus	62.84	70.99
CDY01302	Canola	nucleus	61.82	70.38
Bra012303.1-P	Field mustard	nucleus	61.82	70.38
CDY00413	Canola	cytosol	61.49	70.0
GSMUA_Achr2P12070_001	Banana	cytosol	60.81	68.97
GSMUA_Achr4P21630_001	Banana	cytosol	58.11	66.41
Os07t0490800-01	Rice	cytosol, plasma membrane	26.35	64.46
TraesCS2D01G239100.1	Wheat	golgi	56.76	64.37
Zm00001d004607_P001	Maize	nucleus	35.81	64.24
HORVU2Hr1G050230.9	Barley	nucleus	56.42	63.98
TraesCS2A01G228300.1	Wheat	nucleus	56.42	63.98
TraesCS2B01G253600.2	Wheat	nucleus	56.42	63.98
Zm00001d006410_P013	Maize	nucleus	56.08	63.6
KXG36255	Sorghum	nucleus	55.74	63.22
CDY15130	Canola	extracellular	23.31	61.61
KRH01071	Soybean	nucleus	57.43	60.5
Zm00001d021522_P002	Maize	cytosol, plasma membrane	55.07	58.63

Protein Annotations

Gene3D:1.25.40.570	EntrezGene:102597632	MapMan:19.2.3.3.1.7	GO:GO:0000338	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0010387	GO:GO:0016043	GO:GO:0019538	InterPro:IPR000717	UniProt:M1CGJ9
InterPro:PCI_dom	EnsemblPlantsGene:PGSC0003DMG400026050	PGSC:PGSC0003DMG400026050	EnsemblPlants:PGSC0003DMT400067022	PFscan:PS50250	PANTHER:PTHR15350
PANTHER:PTHR15350:SF5	SMART:SM00088	SMART:SM00753	UniParc:UPI000294DE88	SEG:seg	:

Description

COP9 signalosome complex subunit 7 [Source:PGSC_GENE;Acc:PGSC0003DMG400026050]

Coordinates

chr1:+:69381097..69389562

Molecular Weight (calculated)

33566.4 Da

IEP (calculated)

4.892

GRAVY (calculated)

-0.075

Length

296 amino acids

Sequence
(BLAST)

001: MDIEQKQAEH IEFFVKQASA LKGSALTSVI VEATSHPSLF AFSEILSVPS VLEVFTVNIV LWLCYAIDWA IAGIGCHSRI PFIFVVNCFF VGTCMQLEGT
101: ENSVYLDLLR LFAHGTWSDY KSIAGRLPQL VSAQALKLKQ LTVLTLADTS KVLPYDQLMQ ELDVTNVREL EDFLINECMY VGIVRGKLDQ LKRCFEVQFA
201: AGRDLRPGQL GNMLQTLTDW LTTSDNLLVS IQEKIKWADT MSESDRKHRK EVEERVDEVK KSLSLKADVD FRGHEEIYSE SGGVMDYEED RGRPKR

Best Arabidopsis Sequence Match ( AT1G02090.1 )
(BLAST)

001: MDIEQKQAEI IDQLVKRAST CKSEALGPLI IEATSHPSLF AFSEILALPN VAQLEGTTDS VYLDLLRLFA HGTWGDYKCN ATRLPHLSPD QILKLKQLTV
101: LTLAESNKVL PYDTLMVELD VSNVRELEDF LINECMYAGI VRGKLDQLKR CFEVPFAAGR DLRPGQLGNM LHTLSNWLNT SENLLISIQD KIKWADNMSE
201: MDKKHRKEAE EGVEEVKKSL SMKGDVDIRG NKEMFGEPSG VMDYEEDGIR PKRRRHPVTR

Arabidopsis Description

CSN7COP9 signalosome complex subunit 7 [Source:UniProtKB/Swiss-Prot;Acc:Q94JU3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.