Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc01g104600.2.1 | Tomato | cytosol | 95.43 | 95.43 |
| KRH43983 | Soybean | cytosol | 75.13 | 75.13 |
| KRH10462 | Soybean | cytosol | 74.11 | 74.11 |
| VIT_12s0055g00390.t01 | Wine grape | cytosol | 73.1 | 73.1 |
| AT4G14110.1 | Thale cress | cytosol | 70.56 | 70.56 |
| Bra038444.1-P | Field mustard | cytosol | 70.56 | 70.56 |
| CDY01192 | Canola | cytosol | 70.05 | 70.05 |
| CDY12369 | Canola | cytosol | 68.53 | 68.53 |
| CDY27125 | Canola | cytosol | 68.53 | 68.53 |
| KRH33363 | Soybean | cytosol | 62.44 | 67.58 |
| GSMUA_Achr2P20500_001 | Banana | cytosol | 67.01 | 67.01 |
| CDY12734 | Canola | cytosol | 71.07 | 64.22 |
| Bra032760.1-P | Field mustard | cytosol | 71.07 | 63.35 |
| Os04t0428900-01 | Rice | cytosol | 62.44 | 62.76 |
| TraesCS2A01G301900.1 | Wheat | golgi | 58.88 | 59.18 |
| OQU81583 | Sorghum | cytosol | 57.87 | 58.16 |
| Zm00001d003685_P001 | Maize | extracellular | 57.36 | 57.65 |
| Zm00001d025407_P001 | Maize | cytosol | 57.36 | 57.65 |
| HORVU2Hr1G074740.2 | Barley | cytosol | 54.31 | 54.59 |
| HORVU2Hr1G074780.1 | Barley | mitochondrion, plastid | 58.88 | 52.25 |
| TraesCS2D01G300400.2 | Wheat | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 57.36 | 34.98 |
Protein Annotations
| Gene3D:1.25.40.990 | EntrezGene:102597751 | MapMan:19.2.3.3.1.8 | InterPro:COP9_CSN8 | InterPro:CSN8_PSD8_EIF3K | GO:GO:0000338 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 | GO:GO:0006464 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008180 | GO:GO:0009416 | GO:GO:0009628 | GO:GO:0009719 |
| GO:GO:0009753 | GO:GO:0009987 | GO:GO:0010387 | GO:GO:0016043 | GO:GO:0019538 | InterPro:IPR000717 |
| UniProt:M1CX07 | InterPro:PCI_dom | PFAM:PF10075 | EnsemblPlantsGene:PGSC0003DMG400029776 | PGSC:PGSC0003DMG400029776 | EnsemblPlants:PGSC0003DMT400076584 |
| PFscan:PS50250 | PANTHER:PTHR13339 | UniParc:UPI0002952446 | RefSeq:XP_015166149.1 | : | : |
Description
CSN8 [Source:PGSC_GENE;Acc:PGSC0003DMG400029776]
Coordinates
chr1:+:81418932..81423148
Molecular Weight (calculated)
22485.7 Da
IEP (calculated)
5.593
GRAVY (calculated)
-0.239
Length
197 amino acids
Sequence
(BLAST)
(BLAST)
001: MDTSPLNEAL ASSSYDKIAD ICDNLMLQGA AEGIEFHDEW PYAIHLLGHI YSNDINSARF LWKKIPAAIK EARPEVVAVW RIGQKLWTRD YVGVHEAIRG
101: FSWSPEVQPF VASFAELYKK RMFELLLSAY STISTQDSAR FLGMNENDAT NYVLQQGWAL DSASQMLTVK KQAVITEQKL DPSKLQRLTE YVFHLEH
101: FSWSPEVQPF VASFAELYKK RMFELLLSAY STISTQDSAR FLGMNENDAT NYVLQQGWAL DSASQMLTVK KQAVITEQKL DPSKLQRLTE YVFHLEH
001: MDLSPVKEAL AAKSFDKIAD ICDTLMLQVA SEGIEYHDDW PYAIHLLGYF YVDDCDSARF LWKRIPTAIK ERKPEVVAAW GIGQKLWTHD YAGVYEAIRG
101: YDWSQEAKDM VAAFSDLYTK RMFQLLLSAY STITIHDLAL FLGMTEDDAT TYVVENGWTV DAASQMASVK KQAVKREQKV DSSKLQRLTE YVFHLEH
101: YDWSQEAKDM VAAFSDLYTK RMFQLLLSAY STITIHDLAL FLGMTEDDAT TYVVENGWTV DAASQMASVK KQAVKREQKV DSSKLQRLTE YVFHLEH
Arabidopsis Description
CSN8COP9 signalosome complex subunit 8 [Source:UniProtKB/Swiss-Prot;Acc:P43255]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.