Factsheet for Bra032760.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra003438.1-P
Bra006246.1-P
Bra006326.1-P
Bra007220.1-P
Bra007576.1-P
Bra012303.1-P
Bra012351.1-P
Bra017569.1-P
Bra022023.1-P
Bra022520.1-P
Bra023453.1-P
Bra024548.1-P
Bra025031.1-P
Bra027422.1-P
Bra027690.1-P
Bra032666.1-P
Bra032760.1-P
Bra033219.1-P
Bra033654.1-P
Bra035336.1-P
Bra038444.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G14110.1	Bra012303.1-P	AT1G02090.1	10330469
AT4G14110.1	Bra032666.1-P	AT1G02090.1	10330469
AT4G14110.1	Bra033219.1-P	AT1G02090.1	10330469
AT4G14110.1	Bra012303.1-P	AT1G02090.1	11742986
AT4G14110.1	Bra032666.1-P	AT1G02090.1	11742986
AT4G14110.1	Bra033219.1-P	AT1G02090.1	11742986
AT4G14110.1	Bra012303.1-P	AT1G02090.1	12615944
AT4G14110.1	Bra032666.1-P	AT1G02090.1	12615944
AT4G14110.1	Bra033219.1-P	AT1G02090.1	12615944
AT4G14110.1	Bra012351.1-P	AT1G22920.1	11701877
AT4G14110.1	Bra024548.1-P	AT1G22920.1	11701877
AT4G14110.1	Bra012351.1-P	AT1G22920.1	11742986
AT4G14110.1	Bra024548.1-P	AT1G22920.1	11742986
AT4G14110.1	Bra027690.1-P	AT1G64280.1	19490895
AT4G14110.1	Bra027422.1-P	AT3G13550.1	11877375
AT4G14110.1	Bra007220.1-P	AT3G56150.1	11029466
AT4G14110.1	Bra022520.1-P	AT3G56150.1	11029466
AT4G14110.1	Bra003438.1-P	AT3G61140.1	11701877
AT4G14110.1	Bra007576.1-P	AT3G61140.1	11701877
AT4G14110.1	Bra003438.1-P	AT3G61140.1	12615944
AT4G14110.1	Bra007576.1-P	AT3G61140.1	12615944
AT4G14110.1	Bra003438.1-P	AT3G61140.1	9811788
AT4G14110.1	Bra007576.1-P	AT3G61140.1	9811788
AT4G14110.1	Bra032760.1-P	AT4G14110.1	12615944
AT4G14110.1	Bra038444.1-P	AT4G14110.1	12615944
AT4G14110.1	Bra006246.1-P	AT5G14250.1	11742986
AT4G14110.1	Bra006326.1-P	AT5G14250.1	11742986
AT4G14110.1	Bra023453.1-P	AT5G14250.1	11742986
AT4G14110.1	Bra006246.1-P	AT5G14250.1	12615944
AT4G14110.1	Bra006326.1-P	AT5G14250.1	12615944
AT4G14110.1	Bra023453.1-P	AT5G14250.1	12615944
AT4G14110.1	Bra033654.1-P	AT5G42970.1	12615944
AT4G14110.1	Bra035336.1-P	AT5G42970.1	12615944
AT4G14110.1	Bra017569.1-P	AT5G46210.1	16844902
AT4G14110.1	Bra022023.1-P	AT5G46210.1	16844902
AT4G14110.1	Bra025031.1-P	AT5G46210.1	16844902

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY01192	Canola	cytosol	88.24	98.98
Bra038444.1-P	Field mustard	cytosol	81.9	91.88
AT4G14110.1	Thale cress	cytosol	80.54	90.36
KRH43983	Soybean	cytosol	63.8	71.57
PGSC0003DMT400076584	Potato	cytosol	63.35	71.07
VIT_12s0055g00390.t01	Wine grape	cytosol	62.9	70.56
Solyc01g104600.2.1	Tomato	cytosol	61.99	69.54
KRH10462	Soybean	cytosol	61.09	68.53
GSMUA_Achr2P20500_001	Banana	cytosol	57.92	64.97
KRH33363	Soybean	cytosol	52.49	63.74
Os04t0428900-01	Rice	cytosol	52.49	59.18
TraesCS2A01G301900.1	Wheat	golgi	51.13	57.65
OQU81583	Sorghum	cytosol	47.96	54.08
Zm00001d003685_P001	Maize	extracellular	47.96	54.08
Zm00001d025407_P001	Maize	cytosol	47.06	53.06
HORVU2Hr1G074740.2	Barley	cytosol	46.15	52.04
HORVU2Hr1G074780.1	Barley	mitochondrion, plastid	51.13	50.9
TraesCS2D01G300400.2	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	50.23	34.37

Protein Annotations

Gene3D:1.25.40.990	MapMan:19.2.3.3.1.8	EnsemblPlantsGene:Bra032760	EnsemblPlants:Bra032760.1	EnsemblPlants:Bra032760.1-P	InterPro:COP9_CSN8
InterPro:CSN8_PSD8_EIF3K	GO:GO:0000338	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0008180	GO:GO:0009987
GO:GO:0010387	GO:GO:0016043	GO:GO:0019538	UniProt:M4EVC7	PFAM:PF10075	PANTHER:PTHR13339
UniParc:UPI0002543C1B	:	:	:	:	:

Description

AT4G14110 (E=1e-057) COP9, CSN8, FUS7, EMB143 | COP9 (CONSTITUTIVE PHOTOMORPHOGENIC 9); metalloendopeptidase/ protein binding

Coordinates

chrA04:+:4808418..4809768

Molecular Weight (calculated)

25210.1 Da

IEP (calculated)

4.700

GRAVY (calculated)

-0.063

Length

221 amino acids

Sequence
(BLAST)

001: MDLSPVTEAL AVKSFDKIAD ICDNLMLQVA SEGISFHDDW PYAIHLLGYF YVDDCDSARF LWKTIPTSVK ESKPEVVAAW RIGQRLWTRD YAGVYEAIRG
101: YDWSPEAKDM VAAFSAPLLH LQDINCSMPN AIPVLFFVED VYTKRMFQLL LSAYSTITIR DLALFLGMTE DDATTYVAEN GWTVDTASQM VTVKKQAVKR
201: EQKVDSSKLQ RLTEYVFHLE H

Best Arabidopsis Sequence Match ( AT4G14110.1 )
(BLAST)

001: MDLSPVKEAL AAKSFDKIAD ICDTLMLQVA SEGIEYHDDW PYAIHLLGYF YVDDCDSARF LWKRIPTAIK ERKPEVVAAW GIGQKLWTHD YAGVYEAIRG
101: YDWSQEAKDM VAAFSDLYTK RMFQLLLSAY STITIHDLAL FLGMTEDDAT TYVVENGWTV DAASQMASVK KQAVKREQKV DSSKLQRLTE YVFHLEH

Arabidopsis Description

CSN8COP9 signalosome complex subunit 8 [Source:UniProtKB/Swiss-Prot;Acc:P43255]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.