Factsheet for Os04t0428900-01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1
cytosol 2
peroxisome 2
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, peroxisome, plastid, secretory
BaCelLo:	secretory
EpiLoc:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus, peroxisome
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0194300-01
Os02t0123300-00
Os03t0116500-01
Os03t0197400-01
Os04t0428900-01
Os04t0654700-02
Os07t0124500-01
Os07t0490800-01
Os07t0577400-01
Os08t0119000-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G14110.1	Os07t0490800-01	AT1G02090.1	10330469
AT4G14110.1	Os07t0490800-01	AT1G02090.1	11742986
AT4G14110.1	Os07t0490800-01	AT1G02090.1	12615944
AT4G14110.1	Os04t0654700-02	AT1G22920.1	11701877
AT4G14110.1	Os04t0654700-02	AT1G22920.1	11742986
AT4G14110.1	Os01t0194300-01	AT1G64280.1	19490895
AT4G14110.1	Os04t0654700-02	AT1G71230.1	11742986
AT4G14110.1	Os04t0654700-02	AT1G71230.1	21798944
AT4G14110.1	Os07t0577400-01	AT3G13550.1	11877375
AT4G14110.1	Os02t0123300-00	AT3G56150.1	11029466
AT4G14110.1	Os07t0124500-01	AT3G56150.1	11029466
AT4G14110.1	Os03t0116500-01	AT3G61140.1	11701877
AT4G14110.1	Os03t0116500-01	AT3G61140.1	12615944
AT4G14110.1	Os03t0116500-01	AT3G61140.1	9811788
AT4G14110.1	Os04t0428900-01	AT4G14110.1	12615944
AT4G14110.1	Os08t0119000-01	AT5G14250.1	11742986
AT4G14110.1	Os08t0119000-01	AT5G14250.1	12615944
AT4G14110.1	Os03t0197400-01	AT5G42970.1	12615944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d003685_P001	Maize	extracellular	81.12	81.12
TraesCS2A01G301900.1	Wheat	golgi	81.12	81.12
OQU81583	Sorghum	cytosol	80.61	80.61
Zm00001d025407_P001	Maize	cytosol	79.59	79.59
HORVU2Hr1G074740.2	Barley	cytosol	75.51	75.51
HORVU2Hr1G074780.1	Barley	mitochondrion, plastid	83.67	73.87
GSMUA_Achr2P20500_001	Banana	cytosol	65.82	65.48
Solyc01g104600.2.1	Tomato	cytosol	64.29	63.96
PGSC0003DMT400076584	Potato	cytosol	62.76	62.44
KRH10462	Soybean	cytosol	61.22	60.91
KRH43983	Soybean	cytosol	61.22	60.91
CDY01192	Canola	cytosol	58.67	58.38
VIT_12s0055g00390.t01	Wine grape	cytosol	58.67	58.38
CDY12369	Canola	cytosol	58.16	57.87
Bra038444.1-P	Field mustard	cytosol	58.16	57.87
AT4G14110.1	Thale cress	cytosol	57.65	57.36
CDY27125	Canola	cytosol	57.14	56.85
KRH33363	Soybean	cytosol	52.04	56.04
CDY12734	Canola	cytosol	59.18	53.21
Bra032760.1-P	Field mustard	cytosol	59.18	52.49
TraesCS2D01G300400.2	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	80.1	48.61

Protein Annotations

Gene3D:1.25.40.990	MapMan:19.2.3.3.1.8	EntrezGene:4335854	EMBL:AK061355	EMBL:AK099153	ProteinID:BAF14719.1
ProteinID:BAS89235.1	InterPro:COP9_CSN8	InterPro:CSN8_PSD8_EIF3K	ProteinID:EEE61010.1	GO:GO:0000338	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0008180	GO:GO:0009416	GO:GO:0009628	GO:GO:0009719	GO:GO:0009753
GO:GO:0009987	GO:GO:0010387	GO:GO:0016043	GO:GO:0019538	InterPro:IPR000717	EnsemblPlantsGene:Os04g0428900
EnsemblPlants:Os04t0428900-01	InterPro:PCI_dom	PFAM:PF10075	PFscan:PS50250	PANTHER:PTHR13339	UniProt:Q0JD68
UniParc:UPI000021C695	RefSeq:XP_015633685.1	:	:	:	:

Description

Similar to CSN8. (Os04t0428900-01)

Coordinates

chr4:-:21227408..21230736

Molecular Weight (calculated)

21790.9 Da

IEP (calculated)

6.507

GRAVY (calculated)

-0.074

Length

196 amino acids

Sequence
(BLAST)

001: MDLAAVHAAL AGKSYSSVAP LCDDLFLQAA SRGAATDGWP YAVHLLAHLY LNDLNSARFL WKSTPQEAKD ARPELAAVWR IGQCLWNRDY AGVYAAAQGF
101: EWSPEIADFV AAFLESYRKR IFQLLTSAYS TISVADVAHF MGMNEEDATN YAMQNGWSLD AAARMLTVVK PKVKTNQKLD ASKLQRLTEC VFHLEH

Best Arabidopsis Sequence Match ( AT4G14110.1 )
(BLAST)

001: MDLSPVKEAL AAKSFDKIAD ICDTLMLQVA SEGIEYHDDW PYAIHLLGYF YVDDCDSARF LWKRIPTAIK ERKPEVVAAW GIGQKLWTHD YAGVYEAIRG
101: YDWSQEAKDM VAAFSDLYTK RMFQLLLSAY STITIHDLAL FLGMTEDDAT TYVVENGWTV DAASQMASVK KQAVKREQKV DSSKLQRLTE YVFHLEH

Arabidopsis Description

CSN8COP9 signalosome complex subunit 8 [Source:UniProtKB/Swiss-Prot;Acc:P43255]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.