Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra038444.1-P | Field mustard | cytosol | 96.95 | 96.95 |
| CDY27125 | Canola | cytosol | 96.95 | 96.95 |
| CDY01192 | Canola | cytosol | 91.37 | 91.37 |
| AT4G14110.1 | Thale cress | cytosol | 87.82 | 87.82 |
| CDY12734 | Canola | cytosol | 91.88 | 83.03 |
| KRH43983 | Soybean | cytosol | 71.57 | 71.57 |
| VIT_12s0055g00390.t01 | Wine grape | cytosol | 71.07 | 71.07 |
| KRH10462 | Soybean | cytosol | 68.53 | 68.53 |
| PGSC0003DMT400076584 | Potato | cytosol | 68.53 | 68.53 |
| Solyc01g104600.2.1 | Tomato | cytosol | 68.53 | 68.53 |
| KRH33363 | Soybean | cytosol | 59.39 | 64.29 |
| GSMUA_Achr2P20500_001 | Banana | cytosol | 63.96 | 63.96 |
| Os04t0428900-01 | Rice | cytosol | 57.87 | 58.16 |
| TraesCS2A01G301900.1 | Wheat | golgi | 56.35 | 56.63 |
| OQU81583 | Sorghum | cytosol | 55.33 | 55.61 |
| Zm00001d003685_P001 | Maize | extracellular | 54.31 | 54.59 |
| Zm00001d025407_P001 | Maize | cytosol | 53.81 | 54.08 |
| HORVU2Hr1G074740.2 | Barley | cytosol | 51.27 | 51.53 |
| HORVU2Hr1G074780.1 | Barley | mitochondrion, plastid | 56.85 | 50.45 |
| TraesCS2D01G300400.2 | Wheat | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 55.33 | 33.75 |
Protein Annotations
| Gene3D:1.25.40.990 | MapMan:19.2.3.3.1.8 | UniProt:A0A078FH78 | EnsemblPlants:CDY12369 | ProteinID:CDY12369 | ProteinID:CDY12369.1 |
| InterPro:COP9_CSN8 | InterPro:CSN8_PSD8_EIF3K | GO:GO:0000338 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005737 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008180 |
| GO:GO:0009987 | GO:GO:0010387 | GO:GO:0016043 | GO:GO:0019538 | EnsemblPlantsGene:GSBRNA2T00061565001 | InterPro:IPR000717 |
| InterPro:PCI_dom | PFAM:PF10075 | PFscan:PS50250 | PANTHER:PTHR13339 | UniParc:UPI0004EBB60B | : |
Description
BnaC08g08360DBnaC08g08360D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FH78]
Coordinates
chrLK032021:+:256791..258141
Molecular Weight (calculated)
22451.8 Da
IEP (calculated)
4.654
GRAVY (calculated)
-0.092
Length
197 amino acids
Sequence
(BLAST)
(BLAST)
001: MDLSPVTDAL AVKSFDKIAD ICDTLMLQVS AEGISFQDDW PYAIHLLGYF YLDDCDSARF LWKTIPTSVK ESKPEVAAAW RIGQKLWTRD YAGVYEAIRG
101: FDWSQDAKDM VAAFSDVYTK RMFQLLLSAY STITILDLAL FLGMTEDDAT TYVVEKGWTV DAASQMVTVK KQAIKREQKV DSSKLQRLTE YVFHLEH
101: FDWSQDAKDM VAAFSDVYTK RMFQLLLSAY STITILDLAL FLGMTEDDAT TYVVEKGWTV DAASQMVTVK KQAIKREQKV DSSKLQRLTE YVFHLEH
001: MDLSPVKEAL AAKSFDKIAD ICDTLMLQVA SEGIEYHDDW PYAIHLLGYF YVDDCDSARF LWKRIPTAIK ERKPEVVAAW GIGQKLWTHD YAGVYEAIRG
101: YDWSQEAKDM VAAFSDLYTK RMFQLLLSAY STITIHDLAL FLGMTEDDAT TYVVENGWTV DAASQMASVK KQAVKREQKV DSSKLQRLTE YVFHLEH
101: YDWSQEAKDM VAAFSDLYTK RMFQLLLSAY STITIHDLAL FLGMTEDDAT TYVVENGWTV DAASQMASVK KQAVKREQKV DSSKLQRLTE YVFHLEH
Arabidopsis Description
CSN8COP9 signalosome complex subunit 8 [Source:UniProtKB/Swiss-Prot;Acc:P43255]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.