Factsheet for Bra038444.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra003438.1-P
Bra006246.1-P
Bra006326.1-P
Bra007220.1-P
Bra007576.1-P
Bra012303.1-P
Bra012351.1-P
Bra017569.1-P
Bra022023.1-P
Bra022520.1-P
Bra023453.1-P
Bra024548.1-P
Bra025031.1-P
Bra027422.1-P
Bra027690.1-P
Bra032666.1-P
Bra032760.1-P
Bra033219.1-P
Bra033654.1-P
Bra035336.1-P
Bra038444.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G14110.1	Bra012303.1-P	AT1G02090.1	10330469
AT4G14110.1	Bra032666.1-P	AT1G02090.1	10330469
AT4G14110.1	Bra033219.1-P	AT1G02090.1	10330469
AT4G14110.1	Bra012303.1-P	AT1G02090.1	11742986
AT4G14110.1	Bra032666.1-P	AT1G02090.1	11742986
AT4G14110.1	Bra033219.1-P	AT1G02090.1	11742986
AT4G14110.1	Bra012303.1-P	AT1G02090.1	12615944
AT4G14110.1	Bra032666.1-P	AT1G02090.1	12615944
AT4G14110.1	Bra033219.1-P	AT1G02090.1	12615944
AT4G14110.1	Bra012351.1-P	AT1G22920.1	11701877
AT4G14110.1	Bra024548.1-P	AT1G22920.1	11701877
AT4G14110.1	Bra012351.1-P	AT1G22920.1	11742986
AT4G14110.1	Bra024548.1-P	AT1G22920.1	11742986
AT4G14110.1	Bra027690.1-P	AT1G64280.1	19490895
AT4G14110.1	Bra027422.1-P	AT3G13550.1	11877375
AT4G14110.1	Bra007220.1-P	AT3G56150.1	11029466
AT4G14110.1	Bra022520.1-P	AT3G56150.1	11029466
AT4G14110.1	Bra003438.1-P	AT3G61140.1	11701877
AT4G14110.1	Bra007576.1-P	AT3G61140.1	11701877
AT4G14110.1	Bra003438.1-P	AT3G61140.1	12615944
AT4G14110.1	Bra007576.1-P	AT3G61140.1	12615944
AT4G14110.1	Bra003438.1-P	AT3G61140.1	9811788
AT4G14110.1	Bra007576.1-P	AT3G61140.1	9811788
AT4G14110.1	Bra032760.1-P	AT4G14110.1	12615944
AT4G14110.1	Bra038444.1-P	AT4G14110.1	12615944
AT4G14110.1	Bra006246.1-P	AT5G14250.1	11742986
AT4G14110.1	Bra006326.1-P	AT5G14250.1	11742986
AT4G14110.1	Bra023453.1-P	AT5G14250.1	11742986
AT4G14110.1	Bra006246.1-P	AT5G14250.1	12615944
AT4G14110.1	Bra006326.1-P	AT5G14250.1	12615944
AT4G14110.1	Bra023453.1-P	AT5G14250.1	12615944
AT4G14110.1	Bra033654.1-P	AT5G42970.1	12615944
AT4G14110.1	Bra035336.1-P	AT5G42970.1	12615944
AT4G14110.1	Bra017569.1-P	AT5G46210.1	16844902
AT4G14110.1	Bra022023.1-P	AT5G46210.1	16844902
AT4G14110.1	Bra025031.1-P	AT5G46210.1	16844902

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY12369	Canola	cytosol	96.95	96.95
CDY27125	Canola	cytosol	96.95	96.95
AT4G14110.1	Thale cress	cytosol	87.31	87.31
Bra032760.1-P	Field mustard	cytosol	91.88	81.9
KRH43983	Soybean	cytosol	72.08	72.08
VIT_12s0055g00390.t01	Wine grape	cytosol	71.07	71.07
PGSC0003DMT400076584	Potato	cytosol	70.56	70.56
Solyc01g104600.2.1	Tomato	cytosol	69.54	69.54
KRH10462	Soybean	cytosol	69.04	69.04
KRH33363	Soybean	cytosol	59.9	64.84
GSMUA_Achr2P20500_001	Banana	cytosol	63.45	63.45
Os04t0428900-01	Rice	cytosol	57.87	58.16
TraesCS2A01G301900.1	Wheat	golgi	56.35	56.63
OQU81583	Sorghum	cytosol	55.84	56.12
Zm00001d003685_P001	Maize	extracellular	54.82	55.1
Zm00001d025407_P001	Maize	cytosol	54.31	54.59
HORVU2Hr1G074740.2	Barley	cytosol	51.27	51.53
HORVU2Hr1G074780.1	Barley	mitochondrion, plastid	56.85	50.45
TraesCS2D01G300400.2	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	55.33	33.75

Protein Annotations

Gene3D:1.25.40.990	MapMan:19.2.3.3.1.8	EnsemblPlantsGene:Bra038444	EnsemblPlants:Bra038444.1	EnsemblPlants:Bra038444.1-P	InterPro:COP9_CSN8
InterPro:CSN8_PSD8_EIF3K	GO:GO:0000338	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0008180	GO:GO:0009987
GO:GO:0010387	GO:GO:0016043	GO:GO:0019538	InterPro:IPR000717	UniProt:M4FBH8	InterPro:PCI_dom
PFAM:PF10075	PFscan:PS50250	PANTHER:PTHR13339	UniParc:UPI000254674F	:	:

Description

AT4G14110 (E=3e-100) COP9, CSN8, FUS7, EMB143 | COP9 (CONSTITUTIVE PHOTOMORPHOGENIC 9); metalloendopeptidase/ protein binding

Coordinates

chrA08:-:8703111..8704092

Molecular Weight (calculated)

22401.7 Da

IEP (calculated)

5.068

GRAVY (calculated)

-0.104

Length

197 amino acids

Sequence
(BLAST)

001: MDLSPVTDAL AVKSFDKIAD ICDTLMLQVA AEGISFHDDW PYAIHLLGYF YLDDCDSARF LWKTIPASVK ESKPEVAAAW RIGQKLWTRD YAGVHEAIRG
101: FDWSQDAKDM VAAFSDVYTK RMFQLLLSAY STITIRDLAL FLGMAEDDAT TYVVEKGWTV DAASQMVTVK KQAIKREQKV DSSKLQRLTE YVFHLEH

Best Arabidopsis Sequence Match ( AT4G14110.1 )
(BLAST)

001: MDLSPVKEAL AAKSFDKIAD ICDTLMLQVA SEGIEYHDDW PYAIHLLGYF YVDDCDSARF LWKRIPTAIK ERKPEVVAAW GIGQKLWTHD YAGVYEAIRG
101: YDWSQEAKDM VAAFSDLYTK RMFQLLLSAY STITIHDLAL FLGMTEDDAT TYVVENGWTV DAASQMASVK KQAVKREQKV DSSKLQRLTE YVFHLEH

Arabidopsis Description

CSN8COP9 signalosome complex subunit 8 [Source:UniProtKB/Swiss-Prot;Acc:P43255]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.