Factsheet for VIT_15s0021g01580.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_03s0038g04360.t01
VIT_04s0008g07060.t01
VIT_12s0035g01450.t01
VIT_12s0055g00390.t01
VIT_14s0171g00270.t01
VIT_15s0048g01980.t01
VIT_18s0001g12250.t01
VIT_19s0015g01950.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G02090.1	VIT_03s0038g04360.t01	AT1G71230.1	11742986
AT1G02090.1	VIT_15s0048g01980.t01	AT3G61140.1	10330469
AT1G02090.1	VIT_15s0048g01980.t01	AT3G61140.1	11742986
AT1G02090.1	VIT_15s0048g01980.t01	AT3G61140.1	12615944
AT1G02090.1	VIT_12s0055g00390.t01	AT4G14110.1	10330469
AT1G02090.1	VIT_12s0055g00390.t01	AT4G14110.1	12615944
AT1G02090.1	VIT_19s0015g01950.t01	AT4G26430.1	11742986
AT1G02090.1	VIT_14s0171g00270.t01	AT5G14250.1	11742986
AT1G02090.1	VIT_14s0171g00270.t01	AT5G14250.1	12615944
AT1G02090.1	VIT_04s0008g07060.t01	AT5G25780.1	11029466
AT1G02090.1	VIT_12s0035g01450.t01	AT5G42970.1	11854419
AT1G02090.1	VIT_18s0001g12250.t01	AT5G42970.1	11854419
AT1G02090.1	VIT_12s0035g01450.t01	AT5G42970.1	12615944
AT1G02090.1	VIT_18s0001g12250.t01	AT5G42970.1	12615944
AT1G02090.1	VIT_19s0015g01950.t01	AT5G56280.1	11701877
AT1G02090.1	VIT_19s0015g01950.t01	AT5G56280.1	11742986
AT1G02090.1	VIT_19s0015g01950.t01	AT5G56280.1	12615944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g090290.2.1	Tomato	cytosol	84.56	84.56
KRH13242	Soybean	cytosol	83.78	83.78
KRH20583	Soybean	cytosol	83.01	83.01
Zm00001d023916_P001	Maize	cytosol	15.06	82.98
Zm00001d020231_P001	Maize	cytosol	21.62	82.35
CDX90073	Canola	cytosol	18.92	79.03
AT1G02090.1	Thale cress	cytosol	76.45	76.15
CDY38053	Canola	cytosol	76.45	75.57
Bra032666.1-P	Field mustard	cytoskeleton, cytosol, nucleus	76.45	75.57
CDY00413	Canola	cytosol	74.52	74.23
CDY01302	Canola	nucleus	74.13	73.85
Bra012303.1-P	Field mustard	nucleus	74.13	73.85
GSMUA_Achr2P12070_001	Banana	cytosol	72.97	72.41
PGSC0003DMT400067022	Potato	cytosol	82.63	72.3
GSMUA_Achr4P21630_001	Banana	cytosol	70.66	70.66
Bra033219.1-P	Field mustard	cytosol	25.48	69.47
TraesCS2D01G239100.1	Wheat	golgi	69.5	68.97
TraesCS2B01G253600.2	Wheat	nucleus	69.11	68.58
Zm00001d006410_P013	Maize	nucleus	68.73	68.2
Zm00001d004607_P001	Maize	nucleus	43.24	67.88
TraesCS2A01G228300.1	Wheat	nucleus	68.34	67.82
KXG36255	Sorghum	nucleus	68.34	67.82
HORVU2Hr1G050230.9	Barley	nucleus	68.34	67.82
Os07t0490800-01	Rice	cytosol, plasma membrane	31.66	67.77
CDY15130	Canola	extracellular	27.41	63.39
VIT_02s0234g00120.t01	Wine grape	cytosol	63.32	63.32
Zm00001d021522_P002	Maize	cytosol, plasma membrane	67.95	63.31
KRH01071	Soybean	nucleus	67.57	62.28

Protein Annotations

Gene3D:1.25.40.570	EntrezGene:100261627	wikigene:100261627	MapMan:19.2.3.3.1.7	EMBL:AM448435	ProteinID:CAN69751
ProteinID:CAN69751.1	ProteinID:CBI16662	ProteinID:CBI16662.3	UniProt:D7SLY4	EMBL:FN594952	GO:GO:0000338
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005829
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0008180	GO:GO:0009987	GO:GO:0010387
GO:GO:0016043	GO:GO:0019538	InterPro:IPR000717	EntrezGene:LOC100261627	wikigene:LOC100261627	InterPro:PCI_dom
PFAM:PF01399	PFscan:PS50250	PANTHER:PTHR15350	PANTHER:PTHR15350:SF5	SMART:SM00088	SMART:SM00753
UniParc:UPI00015C9894	ArrayExpress:VIT_15s0021g01580	EnsemblPlantsGene:VIT_15s0021g01580	EnsemblPlants:VIT_15s0021g01580.t01	unigene:Vvi.358	RefSeq:XP_002273686
RefSeq:XP_002273686.1	RefSeq:XP_003633896	RefSeq:XP_003633896.1	RefSeq:XP_003633897	RefSeq:XP_003633897.1	SEG:seg

Description

No Description!

Coordinates

chr15:+:12199248..12212405

Molecular Weight (calculated)

29555.3 Da

IEP (calculated)

4.980

GRAVY (calculated)

-0.401

Length

259 amino acids

Sequence
(BLAST)

001: MDIEQRQAEL IDAFVKQAST HNGSALATVI LDATSHPSLF AFSEILAVPN VVELGGTENS VYLDMLRLFA HGTWSDYKSN VDRLPQLVPD QALKLKQLTV
101: LTLAETNKVL PYDQLMQELD VTNVRELEDF LINECMYAGI VRGKLDQLRR CFEVQFAAGR DLRPGQLGCM IQTLSNWLGT SDNLLLSIQE KIKWADTMSE
201: LDKKHRKEVE ERVEEVKKSF SVKADIDFRG HEEIYSEPGG VMDYEEDRSR PKRRRHPIS

Best Arabidopsis Sequence Match ( AT1G02090.1 )
(BLAST)

001: MDIEQKQAEI IDQLVKRAST CKSEALGPLI IEATSHPSLF AFSEILALPN VAQLEGTTDS VYLDLLRLFA HGTWGDYKCN ATRLPHLSPD QILKLKQLTV
101: LTLAESNKVL PYDTLMVELD VSNVRELEDF LINECMYAGI VRGKLDQLKR CFEVPFAAGR DLRPGQLGNM LHTLSNWLNT SENLLISIQD KIKWADNMSE
201: MDKKHRKEAE EGVEEVKKSL SMKGDVDIRG NKEMFGEPSG VMDYEEDGIR PKRRRHPVTR

Arabidopsis Description

CSN7COP9 signalosome complex subunit 7 [Source:UniProtKB/Swiss-Prot;Acc:Q94JU3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.