Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G56150.1 | OQU77830 | AT1G50030.1 | 23524850 |
| AT3G56150.1 | KXG34696 | AT3G57290.1 | 11029466 |
| AT3G56150.1 | EER92981 | AT3G61140.1 | 11029466 |
| AT3G56150.1 | OQU81583 | AT4G14110.1 | 11029466 |
| AT3G56150.1 | EER91898 | AT5G25780.1 | 11029466 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d002169_P006 | Maize | cytosol | 95.18 | 95.48 |
| Zm00001d002166_P004 | Maize | cytosol | 95.18 | 95.48 |
| Zm00001d020935_P002 | Maize | cytosol | 79.64 | 90.28 |
| Zm00001d002737_P002 | Maize | vacuole | 90.25 | 86.89 |
| Os07t0124500-01 | Rice | nucleus | 86.39 | 86.11 |
| TraesCS5A01G220000.1 | Wheat | nucleus | 82.32 | 82.76 |
| TraesCS5D01G228100.1 | Wheat | golgi, unclear | 82.21 | 82.65 |
| TraesCS5B01G219100.1 | Wheat | nucleus | 82.1 | 82.54 |
| HORVU5Hr1G063770.2 | Barley | nucleus | 81.56 | 82.09 |
| HORVU2Hr1G058390.1 | Barley | cytosol | 14.15 | 80.98 |
| TraesCS5A01G406000.1 | Wheat | cytosol | 79.64 | 80.5 |
| TraesCS5B01G410800.1 | Wheat | cytosol | 80.06 | 80.5 |
| TraesCS5D01G416000.1 | Wheat | cytosol | 79.53 | 80.04 |
| HORVU5Hr1G098600.1 | Barley | cytosol | 78.78 | 79.29 |
| HORVU2Hr1G058370.1 | Barley | cytosol | 15.01 | 76.92 |
| GSMUA_Achr3P04920_001 | Banana | cytosol | 69.13 | 72.31 |
| VIT_16s0039g01140.t01 | Wine grape | cytosol | 6.43 | 72.29 |
| Os02t0123300-00 | Rice | cytosol, mitochondrion, nucleus | 4.61 | 68.25 |
| VIT_08s0007g07180.t01 | Wine grape | cytosol | 68.92 | 67.97 |
| CDY65406 | Canola | cytosol | 58.31 | 66.83 |
| CDY16358 | Canola | cytosol | 58.95 | 65.95 |
| CDX72169 | Canola | cytosol | 58.84 | 65.83 |
| Solyc06g076150.2.1 | Tomato | cytosol, nucleus, plastid | 63.77 | 65.82 |
| PGSC0003DMT400078176 | Potato | cytosol | 64.42 | 65.75 |
| KRH41811 | Soybean | cytosol | 64.84 | 65.33 |
| KRH68073 | Soybean | endoplasmic reticulum | 64.74 | 65.23 |
| Solyc01g102570.2.1 | Tomato | cytosol, nucleus | 24.87 | 65.17 |
| KRH60516 | Soybean | endoplasmic reticulum | 64.52 | 65.08 |
| PGSC0003DMT400046928 | Potato | cytosol | 64.2 | 64.97 |
| Solyc01g102600.2.1 | Tomato | cytosol | 24.76 | 64.71 |
| Bra022520.1-P | Field mustard | cytosol | 59.49 | 64.16 |
| CDY27241 | Canola | cytosol | 59.59 | 64.13 |
| EES13928 | Sorghum | cytosol | 61.09 | 63.69 |
| AT3G56150.1 | Thale cress | cytosol | 61.31 | 63.56 |
| Bra007220.1-P | Field mustard | cytosol | 60.88 | 63.46 |
| Solyc01g102560.2.1 | Tomato | nucleus | 20.9 | 62.9 |
| CDY06037 | Canola | cytosol | 47.59 | 60.82 |
| CDX71953 | Canola | cytosol | 51.13 | 58.17 |
| Bra007396.1-P | Field mustard | cytosol, mitochondrion | 51.34 | 57.99 |
| AT3G22860.1 | Thale cress | cytosol | 48.77 | 56.52 |
| Solyc01g102590.2.1 | Tomato | nucleus | 23.26 | 52.93 |
Protein Annotations
| Gene3D:1.10.10.10 | MapMan:17.4.1.3.3 | UniProt:A0A1B6QDA6 | ncoils:Coil | InterPro:EIF3C | InterPro:EIF3C_N_dom |
| GO:GO:0001731 | GO:GO:0001732 | GO:GO:0002183 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0003743 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005852 | GO:GO:0006412 | GO:GO:0006413 | GO:GO:0006446 | GO:GO:0008135 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016282 |
| GO:GO:0019538 | GO:GO:0031369 | GO:GO:0033290 | InterPro:IPR000717 | InterPro:IPR036388 | EnsemblPlants:KXG35906 |
| ProteinID:KXG35906 | ProteinID:KXG35906.1 | HAMAP:MF_03002 | InterPro:PCI_dom | PFAM:PF01399 | PFAM:PF05470 |
| PFscan:PS50250 | PANTHER:PTHR13937 | SMART:SM00088 | SMART:SM00753 | EnsemblPlantsGene:SORBI_3002G246700 | SUPFAM:SSF46785 |
| UniParc:UPI00081ABB5B | InterPro:WH-like_DNA-bd_sf | InterPro:WH_DNA-bd_sf | SEG:seg | : | : |
Description
hypothetical protein
Coordinates
chr2:+:63495050..63499495
Molecular Weight (calculated)
105947.0 Da
IEP (calculated)
5.153
GRAVY (calculated)
-0.758
Length
933 amino acids
Sequence
(BLAST)
(BLAST)
001: MASRFWGQGD SESEEEEEEV ESEQGSDSDD DGGRGGAGRS LGNRYLKNQE DDSDESDTGH RVIRSLRDKR NEEMRSIVDQ MRNAMKINDW VSLQESFEKL
101: NKHLEKVVRV NESTEVPKMY IKALVLLEDF LAEALANKEA KKKMSSSNAK ALNAMKQKLK KNNKQYEEQI QKCREHPESF DDEPADDKDM DDDDDDDADE
201: SDAEIEDPDK IAMSESEEEP DEDDDDKDGW EKKRSKKDKL MDKQFLKDPS EITWDIVDNK LKEIVASRGK KGTGRIERVE QLTFLTRVAK TPAQKLEILF
301: HVISAQFDVN PSLLGHMPVN VWKKCVNNML LVLDILQQYP NIVVDTSFEP DEKETQKGAD YNGTIHVVGD LVAFLERLDS EFLKTLQCTD PYTKDYVQRL
401: REEPLFLVVA QNVQDYLERV GNLKAAAKVA LRRVELVYYK PQEVYDAMRK LAEQPEDSLD DDDAEAGDEH QAIDDNRGPS PFVVIPEVVP RKPTFPESGR
501: TLMDGLMSLI YKYGDERTKA RAMLCDIYHH AISDEFSVAR DLLLMSHLQD GVQLMDISSQ ILFNRVMAQL GLCAFRAGLI NEAHGCLTEL YSTGRVKELL
601: AQGVQQSRYH EKTPEQERLE RRRQMPYHMH INLELLEATH LICAMLIEVP NMAASTYDKR RPMSKTFRRL LEVSERQTFV GPPENVRDHV MAATRALNKG
701: DHQKAFSVIN SLEIWKLLRN RDHVLEMLKL KIKEEALRTY LFSYSSCYES LSLNQLTTMF DLSEQHAHSI VSKMMMHEEL HASWDQPTKC IVFHSVDQTR
801: LQGLLFQMAD KLSVLVESNE RAYEARTGGT LEGVPPRRRG DGQDSSNMGK WQENFVSSQG RQGGGNRFGY SGRGGGSGQS GGHQRDRGNQ GSRGGYGGGS
901: RFQDGRGRNQ SGSSARGGDG GARMVNLNRV GRV
101: NKHLEKVVRV NESTEVPKMY IKALVLLEDF LAEALANKEA KKKMSSSNAK ALNAMKQKLK KNNKQYEEQI QKCREHPESF DDEPADDKDM DDDDDDDADE
201: SDAEIEDPDK IAMSESEEEP DEDDDDKDGW EKKRSKKDKL MDKQFLKDPS EITWDIVDNK LKEIVASRGK KGTGRIERVE QLTFLTRVAK TPAQKLEILF
301: HVISAQFDVN PSLLGHMPVN VWKKCVNNML LVLDILQQYP NIVVDTSFEP DEKETQKGAD YNGTIHVVGD LVAFLERLDS EFLKTLQCTD PYTKDYVQRL
401: REEPLFLVVA QNVQDYLERV GNLKAAAKVA LRRVELVYYK PQEVYDAMRK LAEQPEDSLD DDDAEAGDEH QAIDDNRGPS PFVVIPEVVP RKPTFPESGR
501: TLMDGLMSLI YKYGDERTKA RAMLCDIYHH AISDEFSVAR DLLLMSHLQD GVQLMDISSQ ILFNRVMAQL GLCAFRAGLI NEAHGCLTEL YSTGRVKELL
601: AQGVQQSRYH EKTPEQERLE RRRQMPYHMH INLELLEATH LICAMLIEVP NMAASTYDKR RPMSKTFRRL LEVSERQTFV GPPENVRDHV MAATRALNKG
701: DHQKAFSVIN SLEIWKLLRN RDHVLEMLKL KIKEEALRTY LFSYSSCYES LSLNQLTTMF DLSEQHAHSI VSKMMMHEEL HASWDQPTKC IVFHSVDQTR
801: LQGLLFQMAD KLSVLVESNE RAYEARTGGT LEGVPPRRRG DGQDSSNMGK WQENFVSSQG RQGGGNRFGY SGRGGGSGQS GGHQRDRGNQ GSRGGYGGGS
901: RFQDGRGRNQ SGSSARGGDG GARMVNLNRV GRV
001: MTSRFFTQVG SESEDESDYE VEVNEVQNDD VNNRYLQSGS EDDDDTDTKR VVKPAKDKRF EEMTYTVDQM KNAMKINDWV SLQENFDKVN KQLEKVMRIT
101: EAVKPPTLYI KTLVMLEDFL NEALANKEAK KKMSTSNSKA LNSMKQKLKK NNKLYEDDIN KYREAPEVEE EKQPEDDDDD DDDDDEVEDD DDSSIDGPTV
201: DPGSDVDEPT DNLTWEKMLS KKDKLLEKLM NKDPKEITWD WVNKKFKEIV AARGKKGTAR FELVDQLTHL TKIAKTPAQK LEILFSVISA QFDVNPGLSG
301: HMPINVWKKC VLNMLTILDI LVKYSNIVVD DTVEPDENET SKPTDYDGKI RVWGNLVAFL ERVDTEFFKS LQCIDPHTRE YVERLRDEPM FLALAQNIQD
401: YFERMGDFKA AAKVALRRVE AIYYKPQEVY DAMRKLAELV EEEEETEEAK EESGPPTSFI VVPEVVPRKP TFPESSRAMM DILVSLIYRN GDERTKARAM
501: LCDINHHALM DNFVTARDLL LMSHLQDNIQ HMDISTQILF NRTMAQLGLC AFRAGMITES HSCLSELYSG QRVRELLAQG VSQSRYHEKT PEQERMERRR
601: QMPYHMHLNL ELLEAVHLIC AMLLEVPNMA ANSHDAKRRV ISKNFRRLLE ISERQAFTAP PENVRDHVMA ATRALTKGDF QKAFEVLNSL EVWRLLKNRD
701: SILDMVKDRI KEEALRTYLF TYSSSYESLS LDQLAKMFDV SEPQVHSIVS KMMINEELHA SWDQPTRCIV FHEVQHSRLQ SLAFQLTEKL SILAESNERA
801: MESRTGGGGL DLSSRRRDNN QDYAGAASGG GGYWQDKANY GQGRQGNRSG YGGGRSSGQN GQWSGQNRGG GYAGRVGSGN RGMQMDGSSR MVSLNRGVRT
101: EAVKPPTLYI KTLVMLEDFL NEALANKEAK KKMSTSNSKA LNSMKQKLKK NNKLYEDDIN KYREAPEVEE EKQPEDDDDD DDDDDEVEDD DDSSIDGPTV
201: DPGSDVDEPT DNLTWEKMLS KKDKLLEKLM NKDPKEITWD WVNKKFKEIV AARGKKGTAR FELVDQLTHL TKIAKTPAQK LEILFSVISA QFDVNPGLSG
301: HMPINVWKKC VLNMLTILDI LVKYSNIVVD DTVEPDENET SKPTDYDGKI RVWGNLVAFL ERVDTEFFKS LQCIDPHTRE YVERLRDEPM FLALAQNIQD
401: YFERMGDFKA AAKVALRRVE AIYYKPQEVY DAMRKLAELV EEEEETEEAK EESGPPTSFI VVPEVVPRKP TFPESSRAMM DILVSLIYRN GDERTKARAM
501: LCDINHHALM DNFVTARDLL LMSHLQDNIQ HMDISTQILF NRTMAQLGLC AFRAGMITES HSCLSELYSG QRVRELLAQG VSQSRYHEKT PEQERMERRR
601: QMPYHMHLNL ELLEAVHLIC AMLLEVPNMA ANSHDAKRRV ISKNFRRLLE ISERQAFTAP PENVRDHVMA ATRALTKGDF QKAFEVLNSL EVWRLLKNRD
701: SILDMVKDRI KEEALRTYLF TYSSSYESLS LDQLAKMFDV SEPQVHSIVS KMMINEELHA SWDQPTRCIV FHEVQHSRLQ SLAFQLTEKL SILAESNERA
801: MESRTGGGGL DLSSRRRDNN QDYAGAASGG GGYWQDKANY GQGRQGNRSG YGGGRSSGQN GQWSGQNRGG GYAGRVGSGN RGMQMDGSSR MVSLNRGVRT
Arabidopsis Description
TIF3C1Eukaryotic translation initiation factor 3 subunit C [Source:UniProtKB/Swiss-Prot;Acc:O49160]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.