Factsheet for Solyc01g102560.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 3
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g088370.2.1
Solyc01g091650.2.1
Solyc01g104600.2.1
Solyc01g106840.1.1
Solyc10g079880.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G56150.1	Solyc01g106840.1.1	AT1G50030.1	23524850
AT3G56150.1	Solyc10g079880.1.1	AT3G57290.1	11029466
AT3G56150.1	Solyc01g091650.2.1	AT3G61140.1	11029466
AT3G56150.1	Solyc01g104600.2.1	AT4G14110.1	11029466
AT3G56150.1	Solyc01g088370.2.1	AT5G25780.1	11029466

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g102590.2.1	Tomato	nucleus	97.42	73.66
PGSC0003DMT400046928	Potato	cytosol	97.1	32.65
Solyc06g076150.2.1	Tomato	cytosol, nucleus, plastid	73.55	25.22
CDY65406	Canola	cytosol	60.97	23.22
CDX72169	Canola	cytosol	61.94	23.02
CDY16358	Canola	cytosol	61.61	22.9
KRH68073	Soybean	endoplasmic reticulum	68.06	22.79
KRH41811	Soybean	cytosol	67.1	22.46
KRH60516	Soybean	endoplasmic reticulum	66.77	22.38
CDY06037	Canola	cytosol	52.58	22.33
Bra007220.1-P	Field mustard	cytosol	64.19	22.23
CDY27241	Canola	cytosol	61.94	22.15
AT3G56150.1	Thale cress	cytosol	64.19	22.11
Bra022520.1-P	Field mustard	cytosol	61.29	21.97
GSMUA_Achr3P04920_001	Banana	cytosol	61.94	21.52
VIT_08s0007g07180.t01	Wine grape	cytosol	65.48	21.46
KXG35906	Sorghum	cytosol	62.9	20.9
Zm00001d002169_P006	Maize	cytosol	62.26	20.75
Zm00001d002166_P004	Maize	cytosol	62.26	20.75
Os07t0124500-01	Rice	nucleus	61.94	20.51
HORVU5Hr1G063770.2	Barley	nucleus	60.97	20.39
TraesCS5A01G220000.1	Wheat	nucleus	60.65	20.26
TraesCS5D01G228100.1	Wheat	golgi, unclear	60.65	20.26
TraesCS5B01G219100.1	Wheat	nucleus	60.65	20.26
TraesCS5A01G406000.1	Wheat	cytosol	59.35	19.93
TraesCS5D01G416000.1	Wheat	cytosol	59.35	19.85
TraesCS5B01G410800.1	Wheat	cytosol	58.39	19.5
Bra007396.1-P	Field mustard	cytosol, mitochondrion	51.94	19.49
HORVU5Hr1G098600.1	Barley	cytosol	58.06	19.42
AT3G22860.1	Thale cress	cytosol	50.32	19.38
CDX71953	Canola	cytosol	50.32	19.02
Zm00001d002737_P002	Maize	vacuole	58.06	18.58
EES13928	Sorghum	cytosol	46.13	15.98
Zm00001d020935_P002	Maize	cytosol	40.97	15.43
Solyc01g102570.2.1	Tomato	cytosol, nucleus	0.0	0.0
Solyc01g102600.2.1	Tomato	cytosol	0.0	0.0
HORVU2Hr1G058370.1	Barley	cytosol	0.0	0.0
Os02t0123300-00	Rice	cytosol, mitochondrion, nucleus	0.0	0.0
VIT_16s0039g01140.t01	Wine grape	cytosol	0.0	0.0
HORVU2Hr1G058390.1	Barley	cytosol	0.0	0.0

Protein Annotations

MapMan:17.4.1.3.3	InterPro:EIF3C_N_dom	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003743
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005852	GO:GO:0006412	GO:GO:0006413	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0031369	InterPro:IPR000717	UniProt:K4B1I4
InterPro:PCI_dom	PFAM:PF01399	PFAM:PF05470	PFscan:PS50250	PANTHER:PTHR13937	PANTHER:PTHR13937:SF0
SMART:SM00088	SMART:SM00753	SUPFAM:SSF46785	EnsemblPlantsGene:Solyc01g102560.2	EnsemblPlants:Solyc01g102560.2.1	UniParc:UPI0002767C67
InterPro:WH_DNA-bd_sf	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr1:-:91346249..91347426

Molecular Weight (calculated)

34704.2 Da

IEP (calculated)

10.379

GRAVY (calculated)

-0.615

Length

310 amino acids

Sequence
(BLAST)

001: MERRRQMPYH MHINLELLEA VHLTCAMLLE VPNMAANSHD MKRRVISKTF RRLLEISERQ TFTGPPENVR DHVMAATRSL RQGNFQKAFD VINSLDVWRL
101: LRNKDGVLEM LRGKIKEEAL RTYLFTYSAS YNSLSLDQVA GMFDLSVPQI HSIVSKMMIS EELHASWDQP SRCMVFHDVE HTRLQALAFQ LTEKLSVLAE
201: SNERATESRI GGGALEGLPP RRRDGQDYAA AAGGRWQDFS FSQGRQGSSG GRTGYAGSRS TSGQTSRDRT NQARGTLGGQ GSRYQSGTTS RGSQMDGSGR
301: MVNLNRGGRS

Best Arabidopsis Sequence Match ( AT3G56150.1 )
(BLAST)

001: MTSRFFTQVG SESEDESDYE VEVNEVQNDD VNNRYLQSGS EDDDDTDTKR VVKPAKDKRF EEMTYTVDQM KNAMKINDWV SLQENFDKVN KQLEKVMRIT
101: EAVKPPTLYI KTLVMLEDFL NEALANKEAK KKMSTSNSKA LNSMKQKLKK NNKLYEDDIN KYREAPEVEE EKQPEDDDDD DDDDDEVEDD DDSSIDGPTV
201: DPGSDVDEPT DNLTWEKMLS KKDKLLEKLM NKDPKEITWD WVNKKFKEIV AARGKKGTAR FELVDQLTHL TKIAKTPAQK LEILFSVISA QFDVNPGLSG
301: HMPINVWKKC VLNMLTILDI LVKYSNIVVD DTVEPDENET SKPTDYDGKI RVWGNLVAFL ERVDTEFFKS LQCIDPHTRE YVERLRDEPM FLALAQNIQD
401: YFERMGDFKA AAKVALRRVE AIYYKPQEVY DAMRKLAELV EEEEETEEAK EESGPPTSFI VVPEVVPRKP TFPESSRAMM DILVSLIYRN GDERTKARAM
501: LCDINHHALM DNFVTARDLL LMSHLQDNIQ HMDISTQILF NRTMAQLGLC AFRAGMITES HSCLSELYSG QRVRELLAQG VSQSRYHEKT PEQERMERRR
601: QMPYHMHLNL ELLEAVHLIC AMLLEVPNMA ANSHDAKRRV ISKNFRRLLE ISERQAFTAP PENVRDHVMA ATRALTKGDF QKAFEVLNSL EVWRLLKNRD
701: SILDMVKDRI KEEALRTYLF TYSSSYESLS LDQLAKMFDV SEPQVHSIVS KMMINEELHA SWDQPTRCIV FHEVQHSRLQ SLAFQLTEKL SILAESNERA
801: MESRTGGGGL DLSSRRRDNN QDYAGAASGG GGYWQDKANY GQGRQGNRSG YGGGRSSGQN GQWSGQNRGG GYAGRVGSGN RGMQMDGSSR MVSLNRGVRT

Arabidopsis Description

TIF3C1Eukaryotic translation initiation factor 3 subunit C [Source:UniProtKB/Swiss-Prot;Acc:O49160]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.