CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra007396.1-P	Field mustard	cytosol, mitochondrion	93.01	82.2
CDX71953	Canola	cytosol	84.38	75.12
CDY65406	Canola	cytosol	72.88	65.36
CDX72169	Canola	cytosol	72.33	63.31
CDY16358	Canola	cytosol	72.33	63.31
CDY27241	Canola	cytosol	72.74	61.25
VIT_16s0039g01140.t01	Wine grape	cytosol	6.85	60.24
Solyc06g076150.2.1	Tomato	cytosol, nucleus, plastid	66.3	53.54
PGSC0003DMT400078176	Potato	cytosol	66.58	53.17
Solyc01g102560.2.1	Tomato	nucleus	22.33	52.58
KRH60516	Soybean	endoplasmic reticulum	66.3	52.32
KRH41811	Soybean	cytosol	66.16	52.16
PGSC0003DMT400046928	Potato	cytosol	65.21	51.63
KRH68073	Soybean	endoplasmic reticulum	65.34	51.51
Zm00001d020935_P002	Maize	cytosol	56.3	49.94
GSMUA_Achr3P04920_001	Banana	cytosol	60.96	49.89
Os07t0124500-01	Rice	nucleus	61.78	48.18
Zm00001d002169_P006	Maize	cytosol	60.96	47.85
KXG35906	Sorghum	cytosol	60.82	47.59
Zm00001d002166_P004	Maize	cytosol	60.55	47.53
TraesCS5D01G228100.1	Wheat	golgi, unclear	59.59	46.88
TraesCS5A01G220000.1	Wheat	nucleus	59.59	46.88
TraesCS5B01G219100.1	Wheat	nucleus	59.45	46.77
HORVU5Hr1G063770.2	Barley	nucleus	59.32	46.71
TraesCS5D01G416000.1	Wheat	cytosol	59.32	46.71
TraesCS5A01G406000.1	Wheat	cytosol	58.9	46.59
TraesCS5B01G410800.1	Wheat	cytosol	58.77	46.23
HORVU5Hr1G098600.1	Barley	cytosol	58.49	46.06
Zm00001d002737_P002	Maize	vacuole	59.04	44.48
Solyc01g102590.2.1	Tomato	nucleus	24.79	44.15
EES13928	Sorghum	cytosol	53.01	43.24
Solyc01g102570.2.1	Tomato	cytosol, nucleus	20.96	42.98
Solyc01g102600.2.1	Tomato	cytosol	20.96	42.86
Os02t0123300-00	Rice	cytosol, mitochondrion, nucleus	3.29	38.1
HORVU2Hr1G058390.1	Barley	cytosol	7.67	34.36
HORVU2Hr1G058370.1	Barley	cytosol	7.95	31.87

Protein Annotations

Gene3D:1.25.40.570	MapMan:17.4.1.3.3	GO:A0A078EYL3	EnsemblPlants:CDY06037	ProteinID:CDY06037	ProteinID:CDY06037.1
ncoils:Coil	InterPro:EIF3C	InterPro:EIF3C_N_dom	GO:GO:0001731	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003743	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005852	GO:GO:0006412	GO:GO:0006413	GO:GO:0008135
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0016282
GO:GO:0019538	GO:GO:0031369	GO:GO:0033290	EnsemblPlantsGene:GSBRNA2T00121890001	InterPro:IPR000717	HAMAP:MF_03002
InterPro:PCI_dom	PFAM:PF01399	PFAM:PF05470	PFscan:PS50250	PANTHER:PTHR13937	PANTHER:PTHR13937:SF0
SMART:SM00088	SMART:SM00753	SUPFAM:SSF46785	UniParc:UPI0004EE52C6	InterPro:WH_DNA-bd_sf	SEG:seg

Description

BnaA09g37430D

Coordinates

chrLK031967:-:414736..417894

Molecular Weight (calculated)

83442.4 Da

IEP (calculated)

7.089

GRAVY (calculated)

-0.501

Length

730 amino acids

Sequence
(BLAST)

001: MLNSKLFAKP GSESDNGSST EEELDEVQDT NTAGGASRYL PGGSDTDDGD LPKRVVQPGK DKRFEEMVHT AEQMKHAMNV NNWVSLLENF DKINKQLEKV
101: MRIKEAVKAP VLYIKTLVML EDFLNETTLE AKNEMSHSNS KALNSMRQRL KKNNKMYEEE INKYRESSET EEAKVSEEEL CNKDPKEITW EWINQKLKEV
201: VSARGRRGTA RSELIDQLTH LMRLAKTPSQ KLEILFGLVS AQFDVNPGLS GHMPIDVWKK CVNNMFTILD VLVKIDAEFF KSLQSVDPHT REYVERLRDE
301: PMLLALAQNI QVYFERCGDF KSAAKVALRR VESVYYKPQE VYDAMRKLAE QEDDSTGPVV PRKPTFAESS RAMMDGLVSL IYKYGDERTK ARAILCDIYH
401: HSLMDKFGTA RDLLLMSHLQ DNVQHMDMST QILFNRSMAQ LGLCAFRVGM FTEAQSCLSE LCSGQRAREL LAQGVSQSRK EKTPEQERLE RRRQMPYHMH
501: INLELLEAVH LICAMLLEVP NMSANSHDAR RKVISKNLRR LIEISERQAF TAPPENVRDH VMAATRALAK GDFEKAFEVL SSLDIWKLLR NRETVLDMVK
601: ARVKEEALKT YLLTYSASYE SLRLDHLAKM FGLSENQVHS IVSKMMISEE LHAYWDQPTH CILFHDVQHN RLQTLAFKLI EKLAVLAESN ERAMEARTGG
701: YGGRGGGTEN RGMQMDGTSP MVSLNRVVRA

Best Arabidopsis Sequence Match ( AT3G22860.1 )
(BLAST)

001: MTTTSRFFAQ SGSESEDESD FEKEEVEGNN TRYLADLPDG EICCGMDTKR VVKPKKDKRF EEMANTIENM KHAMNINDCV YLQETFEKLN KQISKSVKTP
101: TLYIKTLVML EDFLNEDNMK TKEKMSTSNS KALNAMRQKL KKNNLQYQED IKRFRESPEI EDDDEYEEEV VEDSADNVSW EMLFSLDHEE ITWNMVNKKF
201: KEIRAARWSK RRSSSLKLKP GETHAQKHMD LTKIAKTPAQ KVEILFSVIS AEFNVNSGGL SGYMPIDVWK KCVVNMLTIL DILVKYYNIV VDDTVEPDEK
301: ETSKPAAYDG TIRVSGNLVA FLEKIETEFF KSLQCIDPHT NDYVERLKDE PMFLALAQSI QDYLERTGDS KAASKVAFIL VESIYYKPQE VFDAMSKLAD
401: EEIEEANEES GSSSSSFIVV AEIVPRKPTF AKSSRAMMDT LVSFIYKNGD ERTKARAMLC DIYQHALMDN FVTARDLLLM SHLQENIQHM DISTQILFNR
501: TMAQLGLCAF RVGMITESHS CLSELYSGNR VRELLGQGVS QSRDHEKTTE QMLMERRTQI PYHMNINLEL LEAVYLTCAM LLEVPNMAAN SHDSKHKPIS
601: KNIQRLLEKS EKQAFTAPPE NVRVHVIAAT RALIKGNFQE AFSVLNSLDI WRLFKNRDSI LDMVKASISE VALRTYLFTY SSSCYKSLSL AELAKMFDIS
701: ESHVYSIVSK MMINKELNAT WDQPTQCIVF HEVQHNRAQS LAFQITEKLA TLAESNESAM ESKTGGVGLD MTSRRRENSQ DYAAAASDNR GLKMDGSSLT
801: RGVSA

Arabidopsis Description

TIF3C2Eukaryotic translation initiation factor 3 subunit C [Source:UniProtKB/TrEMBL;Acc:F4J1N5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.