Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G187600.1 | Wheat | cytosol | 84.63 | 96.34 |
| TraesCS1B01G196500.2 | Wheat | cytosol | 96.56 | 93.76 |
| HORVU1Hr1G048620.1 | Barley | plastid | 94.72 | 84.8 |
| TraesCS5A01G525900.1 | Wheat | cytosol, unclear | 74.31 | 72.65 |
| GSMUA_Achr11P... | Banana | cytosol | 70.87 | 68.36 |
| GSMUA_Achr11P... | Banana | cytosol | 69.27 | 67.11 |
| GSMUA_Achr8P11930_001 | Banana | cytosol | 69.72 | 66.96 |
| KRH65148 | Soybean | cytosol | 67.43 | 66.22 |
| VIT_15s0048g01980.t01 | Wine grape | cytosol | 66.74 | 65.99 |
| PGSC0003DMT400071374 | Potato | cytosol | 66.51 | 65.91 |
| Solyc01g091650.2.1 | Tomato | cytosol | 66.51 | 65.91 |
| KRH48239 | Soybean | cytosol | 66.74 | 65.25 |
| AT3G61140.1 | Thale cress | cytosol | 63.76 | 63.04 |
| CDY52333 | Canola | cytosol | 63.53 | 62.39 |
| CDY65304 | Canola | cytosol | 63.3 | 62.3 |
| Bra007576.1-P | Field mustard | cytosol | 62.16 | 62.16 |
| CDY45683 | Canola | cytosol | 63.76 | 61.37 |
| CDX67853 | Canola | cytosol | 63.3 | 60.93 |
| Bra003438.1-P | Field mustard | cytosol | 63.3 | 60.93 |
| TraesCS2A01G320800.1 | Wheat | cytosol | 16.51 | 18.56 |
| TraesCS6A01G212300.1 | Wheat | cytosol | 16.97 | 18.41 |
Protein Annotations
| Gene3D:1.25.40.570 | MapMan:19.2.3.3.1.1 | InterPro:CSN1 | GO:GO:0000338 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008180 |
| GO:GO:0009987 | GO:GO:0019538 | InterPro:IPR000717 | InterPro:PCI_dom | PFAM:PF01399 | PFAM:PF10602 |
| PFscan:PS50250 | PANTHER:PTHR14145 | PANTHER:PTHR14145:SF2 | InterPro:Rpn7/CSN1 | SMART:SM00088 | SMART:SM00753 |
| SUPFAM:SSF46785 | EnsemblPlantsGene:TraesCS1A01G188800 | EnsemblPlants:TraesCS1A01G188800.1 | InterPro:WH_DNA-bd_sf | SEG:seg | : |
Description
No Description!
Coordinates
chr1A:+:341867740..341871937
Molecular Weight (calculated)
49255.8 Da
IEP (calculated)
7.030
GRAVY (calculated)
-0.302
Length
436 amino acids
Sequence
(BLAST)
(BLAST)
001: MDVEDELQTA PAPADGGESS HALVSGDQLD MEAYAAQYSG RTRVGRLLFI AEKCGSEQMR LDALRLAYDW ALKGEDTALH RDVSAKIAGR LGPRYAADQP
101: WSGAVERRAL LRKDKLDSEL NVYRTNLIKE SIRMGYNDLG DFHYAQGHLS DAFKSYIRTR DYCTTSKHVV QMCLNVILVS IELGQFMHVS NYVIKAEQTP
201: DDLDRITAAK LRAAAGLAYM ETNKYKLAAR KFIETGSELR SNYSEVIAPH DVAVYGALCA LASFDRSELK SKVIDNYNFC NFLELVPEVR ELVNDFYASR
301: YGSCLGYLEK LKSNLLLDMH LHGHIETLYK DIRHKAIIQY TFPFISVDLN LMAVAFQTSV SLLEKELAAL ITDNKIQARI DSHNKILYAS HADQRNGTFQ
401: RALQTGNEFE RDVKSMLLRA NLLKHEFSQK AAERKV
101: WSGAVERRAL LRKDKLDSEL NVYRTNLIKE SIRMGYNDLG DFHYAQGHLS DAFKSYIRTR DYCTTSKHVV QMCLNVILVS IELGQFMHVS NYVIKAEQTP
201: DDLDRITAAK LRAAAGLAYM ETNKYKLAAR KFIETGSELR SNYSEVIAPH DVAVYGALCA LASFDRSELK SKVIDNYNFC NFLELVPEVR ELVNDFYASR
301: YGSCLGYLEK LKSNLLLDMH LHGHIETLYK DIRHKAIIQY TFPFISVDLN LMAVAFQTSV SLLEKELAAL ITDNKIQARI DSHNKILYAS HADQRNGTFQ
401: RALQTGNEFE RDVKSMLLRA NLLKHEFSQK AAERKV
001: MDIEGDDQLD LDVEAYSRNY EGRNLVLRLL HIAENSVGPM FTDDLELEAL RLAYDLIRND GIVCDMRLFT VIAEKIQGRL GEGYLLDEKW RLTKNNNFVK
101: QDSILRNDLE SATDELEKDR LALRQYWLHY HCGQMAIVFR PYPRQVQTID AYMATLLVAL ETRNFGELPH RSVEQIAYCN VKRAYGFKID CFKSLSNLLE
201: SKYQVTAEGN AVDTIVNPIG QVASHLENVI KPFGPCDYLI DVIKKLLAGH FTDCMTLLEK QRPRLLLDFY LRDHVDNLLS MMRDGGRLRV DSGGMVITES
301: QVKRLMLEGK IKGRIEGQVF CPQMQVKSSE IDDSHEPPPC SVRSHLERVP RTDRIPKMIR KEDTSPL
101: QDSILRNDLE SATDELEKDR LALRQYWLHY HCGQMAIVFR PYPRQVQTID AYMATLLVAL ETRNFGELPH RSVEQIAYCN VKRAYGFKID CFKSLSNLLE
201: SKYQVTAEGN AVDTIVNPIG QVASHLENVI KPFGPCDYLI DVIKKLLAGH FTDCMTLLEK QRPRLLLDFY LRDHVDNLLS MMRDGGRLRV DSGGMVITES
301: QVKRLMLEGK IKGRIEGQVF CPQMQVKSSE IDDSHEPPPC SVRSHLERVP RTDRIPKMIR KEDTSPL
Arabidopsis Description
COP9 signalosome complex-related / CSN complex-like protein [Source:UniProtKB/TrEMBL;Acc:F4JAZ8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.