Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G188800.1 | Wheat | cytosol | 96.34 | 84.63 |
| TraesCS1B01G196500.2 | Wheat | cytosol | 96.34 | 82.18 |
| HORVU1Hr1G048620.1 | Barley | plastid | 94.52 | 74.33 |
| TraesCS4D01G350200.1 | Wheat | cytosol, golgi | 77.81 | 66.82 |
| GSMUA_Achr11P... | Banana | cytosol | 74.41 | 63.05 |
| GSMUA_Achr11P... | Banana | cytosol | 72.85 | 62.0 |
| GSMUA_Achr8P11930_001 | Banana | cytosol | 73.37 | 61.89 |
| VIT_15s0048g01980.t01 | Wine grape | cytosol | 70.5 | 61.22 |
| PGSC0003DMT400071374 | Potato | cytosol | 70.23 | 61.14 |
| Solyc01g091650.2.1 | Tomato | cytosol | 69.97 | 60.91 |
| KRH65148 | Soybean | cytosol | 69.45 | 59.91 |
| KRH48239 | Soybean | cytosol | 68.93 | 59.19 |
| AT3G61140.1 | Thale cress | cytosol | 67.36 | 58.5 |
| CDY65304 | Canola | cytosol | 67.62 | 58.47 |
| CDY52333 | Canola | cytosol | 67.36 | 58.11 |
| Bra007576.1-P | Field mustard | cytosol | 65.8 | 57.8 |
| CDY45683 | Canola | cytosol | 67.62 | 57.17 |
| CDX67853 | Canola | cytosol | 67.1 | 56.73 |
| Bra003438.1-P | Field mustard | cytosol | 67.1 | 56.73 |
| TraesCS5D01G238500.1 | Wheat | cytosol | 35.25 | 40.54 |
| TraesCS2D01G341500.1 | Wheat | golgi, unclear | 18.8 | 18.56 |
| TraesCS6D01G195300.1 | Wheat | golgi, unclear | 19.06 | 18.48 |
Protein Annotations
| Gene3D:1.25.40.570 | MapMan:19.2.3.3.1.1 | InterPro:CSN1 | GO:GO:0000338 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008180 |
| GO:GO:0009987 | GO:GO:0019538 | InterPro:IPR000717 | InterPro:PCI_dom | PFAM:PF01399 | PFAM:PF10602 |
| PFscan:PS50250 | PANTHER:PTHR14145 | PANTHER:PTHR14145:SF2 | InterPro:Rpn7/CSN1 | SMART:SM00088 | SMART:SM00753 |
| SUPFAM:SSF46785 | EnsemblPlantsGene:TraesCS1D01G187600 | EnsemblPlants:TraesCS1D01G187600.1 | InterPro:WH_DNA-bd_sf | SEG:seg | : |
Description
No Description!
Coordinates
chr1D:-:258980923..258984339
Molecular Weight (calculated)
43794.5 Da
IEP (calculated)
8.719
GRAVY (calculated)
-0.301
Length
383 amino acids
Sequence
(BLAST)
(BLAST)
001: MRLDALRLAY DWALKGEDTA LHRDVSAKIA GRLGPRYAAD QPWSDAVERR ALLRKDKLDS ELNVYRSFYP QTNLIKESIR LGYNDLGDFH YAQGHLSDAF
101: KSYIRTRDYC TTSKHVVQMC LNVILVSIEL GQFMHVSNYV IKAEQTPDDM DPITAAKLRA AAGLAYMETN KYKLAARKFI ETGSELRSNY SEVIAPQDVA
201: VYGALCALAS FDRSELKSKV IDNYNFRNFL ELVPEVRELV NDFYASRYGS CLGYLEKLKS NLLLDMHLHG HIETLYKDIR HKAIIRYTFP FISVDLNLMA
301: VAFQTSVSLL EKELAALITD NKIQARIDSH NKILYASHAD QRNATFQRAL QTGNEFERDV KSMLLRANLL KHDFSQKAAE RKV
101: KSYIRTRDYC TTSKHVVQMC LNVILVSIEL GQFMHVSNYV IKAEQTPDDM DPITAAKLRA AAGLAYMETN KYKLAARKFI ETGSELRSNY SEVIAPQDVA
201: VYGALCALAS FDRSELKSKV IDNYNFRNFL ELVPEVRELV NDFYASRYGS CLGYLEKLKS NLLLDMHLHG HIETLYKDIR HKAIIRYTFP FISVDLNLMA
301: VAFQTSVSLL EKELAALITD NKIQARIDSH NKILYASHAD QRNATFQRAL QTGNEFERDV KSMLLRANLL KHDFSQKAAE RKV
001: MERDEEASGP MMEMCTNGGE ETSNRRPIIS GEPLDIEAYA ALYKGRTKIM RLLFIANHCG GNHALQFDAL RMAYDEIKKG ENTQLFREVV NKIGNRLGEK
101: YGMDLAWCEA VDRRAEQKKV KLENELSSYR TNLIKESIRM GYNDFGDFYY ACGMLGDAFK NYIRTRDYCT TTKHIIHMCM NAILVSIEMG QFTHVTSYVN
201: KAEQNPETLE PMVNAKLRCA SGLAHLELKK YKLAARKFLD VNPELGNSYN EVIAPQDIAT YGGLCALASF DRSELKQKVI DNINFRNFLE LVPDVRELIN
301: DFYSSRYASC LEYLASLKSN LLLDIHLHDH VDTLYDQIRK KALIQYTLPF VSVDLSRMAD AFKTSVSGLE KELEALITDN QIQARIDSHN KILYARHADQ
401: RNATFQKVLQ MGNEFDRDVR AMLLRANLLK HEYHARSARK L
101: YGMDLAWCEA VDRRAEQKKV KLENELSSYR TNLIKESIRM GYNDFGDFYY ACGMLGDAFK NYIRTRDYCT TTKHIIHMCM NAILVSIEMG QFTHVTSYVN
201: KAEQNPETLE PMVNAKLRCA SGLAHLELKK YKLAARKFLD VNPELGNSYN EVIAPQDIAT YGGLCALASF DRSELKQKVI DNINFRNFLE LVPDVRELIN
301: DFYSSRYASC LEYLASLKSN LLLDIHLHDH VDTLYDQIRK KALIQYTLPF VSVDLSRMAD AFKTSVSGLE KELEALITDN QIQARIDSHN KILYARHADQ
401: RNATFQKVLQ MGNEFDRDVR AMLLRANLLK HEYHARSARK L
Arabidopsis Description
CSN1SK31 [Source:UniProtKB/TrEMBL;Acc:A0A178VFN7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.