CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH29008	Soybean	nucleus	95.78	94.93
KRH27723	Soybean	nucleus	75.0	73.89
KRH77687	Soybean	nucleus	73.8	72.49
VIT_08s0040g01300.t01	Wine grape	nucleus	21.99	63.48
GSMUA_Achr5P12500_001	Banana	mitochondrion, nucleus	25.9	55.84

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.20.140.80	EntrezGene:100798342	MapMan:13.1.2.3	MapMan:15.5.10	EMBL:ACUP02007166
ncoils:Coil	InterPro:E2F-DP_heterodim	InterPro:E2F_WHTH_DNA-bd_dom	EnsemblPlantsGene:GLYMA_12G018000	GO:GO:0000981	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005667	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0006357	GO:GO:0007049	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
UniProt:I1LP79	InterPro:IPR036388	InterPro:IPR038168	EnsemblPlants:KRH24035	ProteinID:KRH24035	ProteinID:KRH24035.1
PFAM:PF02319	PFAM:PF08781	PIRSF:PIRSF009404	PANTHER:PTHR12548	PANTHER:PTHR12548:SF15	SMART:SM01138
SMART:SM01372	SUPFAM:SSF144074	SUPFAM:SSF46785	InterPro:TF_DP_C_sf	InterPro:Transc_factor_DP_C	InterPro:Transcrpt_fac_DP
UniParc:UPI00023CBE98	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr12:-:1252709..1256330

Molecular Weight (calculated)

37039.6 Da

IEP (calculated)

5.296

GRAVY (calculated)

-0.698

Length

332 amino acids

Sequence
(BLAST)

001: MGDEEEEEVL GSGQSASTNS LPPPADSTLL KLNHLDIHAD DAVSHASLAA KKKKRGGQRA VGPDKSGRGL RQFSMKVCEK VESRGRTTYN EVADELVAEF
101: SEPSNSELPP DQQQYDEKNI RRRVYDALNV LMAMDIISKD KKEIQWRGLP RTTVNDIEEL KTERLGLRNR IEKKTAYLQE LEEQFVGLQN LIQRNEQLYS
201: SGNPPSGGVS LPFILVQTRP HATVEVEISE DMQLVHFDFN STPFELHDDN YVLKAMKFGE RPLEDNMTHN LTDGGEGSSM SGLCQPQAPT ILNVSNRPPT
301: SPPLPGILKR NLLQLIDRHN SYSSVQPSHS VG

Best Arabidopsis Sequence Match ( AT5G02470.1 )
(BLAST)

001: MSMEMELFVT PEKQRQHPSV SVEKTPVRRK LIVDDDSEIG SEKKGQSRTS GGGLRQFSVM VCQKLEAKKI TTYKEVADEI ISDFATIKQN AEKPLNENEY
101: NEKNIRRRVY DALNVFMALD IIARDKKEIR WKGLPITCKK DVEEVKMDRN KVMSSVQKKA AFLKELREKV SSLESLMSRN QEMVVKTQGP AEGFTLPFIL
201: LETNPHAVVE IEISEDMQLV HLDFNSTPFS VHDDAYILKL MQEQKQEQNR VSSSSSTHHQ SQHSSAHSSS SSCIASGTSG PVCWNSGSID TR

Arabidopsis Description

DPADPA [Source:UniProtKB/TrEMBL;Acc:A0A178ULD9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.