Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH27723 | Soybean | nucleus | 96.15 | 96.44 |
| KRH24035 | Soybean | nucleus | 72.49 | 73.8 |
| KRH29008 | Soybean | nucleus | 72.49 | 73.13 |
| Solyc10g078430.1.1 | Tomato | nucleus | 73.37 | 70.06 |
| PGSC0003DMT400021592 | Potato | nucleus | 73.08 | 69.38 |
| CDX80867 | Canola | nucleus | 60.06 | 63.44 |
| CDY44365 | Canola | nucleus | 62.72 | 61.45 |
| AT5G03415.1 | Thale cress | nucleus | 69.53 | 61.04 |
| GSMUA_Achr5P12500_001 | Banana | mitochondrion, nucleus | 25.74 | 56.49 |
| CDY11252 | Canola | nucleus | 60.06 | 56.23 |
| Bra005763.1-P | Field mustard | nucleus | 60.65 | 56.16 |
Protein Annotations
| Gene3D:1.10.10.10 | Gene3D:1.20.140.80 | EntrezGene:100781272 | MapMan:13.1.2.3 | MapMan:15.5.10 | EMBL:ACUP02000681 |
| ncoils:Coil | InterPro:E2F-DP_heterodim | InterPro:E2F_WHTH_DNA-bd_dom | EnsemblPlantsGene:GLYMA_01G228100 | GO:GO:0000981 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005667 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0006357 | GO:GO:0007049 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| UniProt:I1JAG8 | InterPro:IPR036388 | InterPro:IPR038168 | EnsemblPlants:KRH77687 | ProteinID:KRH77687 | ProteinID:KRH77687.1 |
| PFAM:PF02319 | PFAM:PF08781 | PIRSF:PIRSF009404 | PANTHER:PTHR12548 | PANTHER:PTHR12548:SF15 | SMART:SM01138 |
| SMART:SM01372 | SUPFAM:SSF144074 | SUPFAM:SSF46785 | InterPro:TF_DP_C_sf | InterPro:Transc_factor_DP_C | InterPro:Transcrpt_fac_DP |
| UniParc:UPI0002337804 | InterPro:WH-like_DNA-bd_sf | InterPro:WH_DNA-bd_sf | SEG:seg | : | : |
Description
hypothetical protein
Coordinates
chr1:-:55622842..55629922
Molecular Weight (calculated)
37558.9 Da
IEP (calculated)
5.492
GRAVY (calculated)
-0.814
Length
338 amino acids
Sequence
(BLAST)
(BLAST)
001: MGTQPQQTFW EEEDEEMQGR GTTISGQSMS TSRSLGSPSS RSEQTMATPA SDSTFLRLNH LDIHGDDAGS QGAVASKKKK RGQRAIGGDK SGRGLRQFSM
101: KVCEKVESKG RTTYNEVADE LVAEFADPIN GVSTPDQQQY DEKNIRRRVY DALNVLMAMD IISKDKKEIQ WKGLPRTSLS DMEELKSERL GLRNRIEKKA
201: AYLQELEEQY IGLQKLIQRN EQLYSSGNAP NGGVSLPFIL VQTRPHATVE VEISEDMQLV HFDFNSTPFE LHDDNYVLKA MKLCEGSHND NTTDNPTDGG
301: EGSSIYAQVP TSVSNPPNRP PSSPPLPGIL KARVKNEH
101: KVCEKVESKG RTTYNEVADE LVAEFADPIN GVSTPDQQQY DEKNIRRRVY DALNVLMAMD IISKDKKEIQ WKGLPRTSLS DMEELKSERL GLRNRIEKKA
201: AYLQELEEQY IGLQKLIQRN EQLYSSGNAP NGGVSLPFIL VQTRPHATVE VEISEDMQLV HFDFNSTPFE LHDDNYVLKA MKLCEGSHND NTTDNPTDGG
301: EGSSIYAQVP TSVSNPPNRP PSSPPLPGIL KARVKNEH
001: MTTTGSNSNH NHHESNNNNN NPSTRSWGTA VSGQSVSTSG SMGSPSSRSE QTITVVTSTS DTTFQRLNNL DIQGDDAGSQ GASGVKKKKR GQRAAGPDKT
101: GRGLRQFSMK VCEKVESKGR TTYNEVADEL VAEFALPNND GTSPDQQQYD EKNIRRRVYD ALNVLMAMDI ISKDKKEIQW RGLPRTSLSD IEELKNERLS
201: LRNRIEKKTA YSQELEEQYV GLQNLIQRNE HLYSSGNAPS GGVALPFILV QTRPHATVEV EISEDMQLVH FDFNSTPFEL HDDNFVLKTM KFCDQPPQQP
301: NGRNNSQLVC HNFTPENPNK GPSTGPTPQL DMYETHLQSQ QHQQHSQLQI IPMPETNNVT SSADTAPVKS PSLPGIMNSS MKPEN
101: GRGLRQFSMK VCEKVESKGR TTYNEVADEL VAEFALPNND GTSPDQQQYD EKNIRRRVYD ALNVLMAMDI ISKDKKEIQW RGLPRTSLSD IEELKNERLS
201: LRNRIEKKTA YSQELEEQYV GLQNLIQRNE HLYSSGNAPS GGVALPFILV QTRPHATVEV EISEDMQLVH FDFNSTPFEL HDDNFVLKTM KFCDQPPQQP
301: NGRNNSQLVC HNFTPENPNK GPSTGPTPQL DMYETHLQSQ QHQQHSQLQI IPMPETNNVT SSADTAPVKS PSLPGIMNSS MKPEN
Arabidopsis Description
DPBTranscription factor-like protein DPB [Source:UniProtKB/Swiss-Prot;Acc:Q9FNY2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.