CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH05109
KRH09492
KRH13310
KRH16010
KRH20664
KRH27723	cytosol, nucleus
KRH28363
KRH38971
KRH52488
KRH52489
KRH63701
KRH77118
KRH77687	cytosol, nucleus

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G47870.1	KRH13310	AT3G12280.1	22921914
AT1G47870.1	KRH20664	AT3G12280.1	22921914
AT1G47870.1	KRH63701	AT3G12280.1	22921914
AT1G47870.1	KRH09492	AT3G17760.1	20706207
AT1G47870.1	KRH38971	AT3G17760.1	20706207
AT1G47870.1	KRH28363	AT4G37630.1	20407024
AT1G47870.1	KRH77118	AT4G37630.1	20407024
AT1G47870.1	KRH27723	AT5G03415.1	11891240
AT1G47870.1	KRH77687	AT5G03415.1	11891240
AT1G47870.1	KRH27723	AT5G03415.1	20407024
AT1G47870.1	KRH77687	AT5G03415.1	20407024
AT1G47870.1	KRH27723	AT5G03415.1	20407024
AT1G47870.1	KRH77687	AT5G03415.1	20407024
AT1G47870.1	KRH05109	AT5G25460.1	20706207
AT1G47870.1	KRH16010	AT5G25460.1	20706207
AT1G47870.1	KRH52488	AT5G25460.1	20706207
AT1G47870.1	KRH52489	AT5G25460.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH51709	Soybean	nucleus	75.13	33.33
KRH61047	Soybean	cytosol, nucleus, plastid	50.26	26.76
HORVU2Hr1G004820.2	Barley	cytosol	14.81	22.4
VIT_18s0001g14110.t01	Wine grape	nucleus	40.74	17.15
Bra014096.1-P	Field mustard	nucleus	31.22	16.08
CDY16998	Canola	nucleus	31.22	16.08
KRH26172	Soybean	nucleus	15.87	15.96
CDY17797	Canola	nucleus	30.16	15.12
Solyc04g081350.2.1	Tomato	plastid	31.75	15.11
PGSC0003DMT400009682	Potato	plastid	31.75	15.0
AT1G47870.1	Thale cress	nucleus, plastid	31.22	14.9
KRH25298	Soybean	nucleus	32.8	13.78
KRH30372	Soybean	nucleus	32.8	13.48
GSMUA_Achr4P17950_001	Banana	nucleus	28.57	13.37
KRH72218	Soybean	nucleus	32.28	13.03
KRH32815	Soybean	nucleus	31.75	12.88
EES11756	Sorghum	plastid	28.04	10.82
Zm00001d004512_P001	Maize	plastid	26.45	10.68
TraesCS2D01G031400.1	Wheat	plastid	25.93	10.68
TraesCS2A01G031800.1	Wheat	plastid	25.4	10.62
TraesCS2B01G043500.1	Wheat	plastid	25.4	10.39
Os04t0112200-00	Rice	nucleus, plastid	25.93	10.21

Protein Annotations

EMBL:ACUP02010059	EnsemblPlants:KRH07603	EnsemblPlantsGene:GLYMA_16G097500	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	InterPro:E2F	InterPro:E2F-DP_heterodim	InterPro:E2F_CC-MB	PANTHER:PTHR12081	PANTHER:PTHR12081:SF51
PFAM:PF16421	ProteinID:KRH07603	ProteinID:KRH07603.1	SUPFAM:SSF144074	UniParc:UPI000296C615	UniProt:K7MGI7
MapMan:13.1.2.2	MapMan:15.5.10	:	:	:	:

Description

hypothetical protein

Coordinates

chr16:-:18927077..18928800

Molecular Weight (calculated)

21734.9 Da

IEP (calculated)

4.490

GRAVY (calculated)

-0.610

Length

189 amino acids

Sequence
(BLAST)

001: MGRSDHPEIP EADPQPPLRL RLQECPQQQL VPPSACLIIR YLFLIKEDIL SLPCFQNQEI IAIKAPKASC IEVPDPDEEL GFRQRQYKMI VRSAIGPINL
101: YLLSKDDRKF EDDSANRMKL MDPSWNSDSI RKRGVGLLES QHDEKKNPSE RFSLQGSQAF GIQEITPTDF EMEDDYWFQS DPGVSQIEL

Best Arabidopsis Sequence Match ( AT2G36010.2 )
(BLAST)

001: MSGVVRSSPG SSQPPPPPPH HPPSSPVPVT STPVIPPIRR HLAFASTKPP FHPSDDYHRF NPSSLSNNND RSFVHGCGVV DREEDAVVVR SPIFPSEIGL
101: EIRGCFGDFD CYLLLLSLIQ KLRSVRLSSI RVNFCRLFSF AMSRKRKATM DMVVAPSNNG FTSSGFTNIP SSPCQTPRKG GRVNIKSKAK GNKSTPQTPI
201: STNAVRSFYE ISFMSRVTSL LTKKFVNLIK QAKDGMLDLN KAAETLEVQK RRIYDITNVL EGIDLIEKPF KNRILWKGVD ACPGDEDADV SVLQLQAEIE
301: NLALEEQALD NQIRWLFVTE EDIKSLPGFQ NQTLIAVKAP HGTTLEVPDP DEAADHPQRR YRIILRSTMG PIDVYLVSEF EGKFEDTNGS GAAPPACLPI
401: ASSSGSTGHH DIEALTVDNP ETAIVSHDHP HPQPGDTSDL NYLQEQVGGM LKITPSDVEN DESDYWLLSN AEISMTDIWK TDSGIDWDYG IADVSTPPPG
501: MGEIAPTAVD STPR

Arabidopsis Description

E2F3E2F transcription factor 3 [Source:UniProtKB/TrEMBL;Acc:F4ILT1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.