Factsheet for Solyc04g081350.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
nucleus 4

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g098240.2.1
Solyc08g067030.2.1
Solyc09g091280.2.1
Solyc10g078430.1.1	cytosol, nucleus

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G47870.1	Solyc09g091280.2.1	AT3G12280.1	22921914
AT1G47870.1	Solyc03g098240.2.1	AT3G17760.1	20706207
AT1G47870.1	Solyc10g078430.1.1	AT5G03415.1	11891240
AT1G47870.1	Solyc10g078430.1.1	AT5G03415.1	20407024
AT1G47870.1	Solyc10g078430.1.1	AT5G03415.1	20407024
AT1G47870.1	Solyc08g067030.2.1	AT5G25460.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400009682	Potato	plastid	82.62	82.0
VIT_18s0001g14110.t01	Wine grape	nucleus	43.07	38.08
KRH61047	Soybean	cytosol, nucleus, plastid	34.01	38.03
Bra014096.1-P	Field mustard	nucleus	34.76	37.6
CDY16998	Canola	nucleus	34.76	37.6
CDY17797	Canola	nucleus	34.51	36.34
AT1G47870.1	Thale cress	nucleus, plastid	35.01	35.1
KRH51709	Soybean	nucleus	35.01	32.63
KRH07603	Soybean	cytosol	15.11	31.75
GSMUA_Achr4P17950_001	Banana	nucleus	30.48	29.95
Solyc01g007760.2.1	Tomato	plastid	35.26	29.23
Solyc11g068800.1.1	Tomato	mitochondrion, nucleus	32.49	28.73
TraesCS2D01G031400.1	Wheat	plastid	31.74	27.45
TraesCS2B01G043500.1	Wheat	plastid	31.49	27.06
TraesCS2A01G031800.1	Wheat	plastid	30.48	26.77
EES11756	Sorghum	plastid	33.0	26.73
Os04t0112200-00	Rice	nucleus, plastid	31.99	26.46
Zm00001d004512_P001	Maize	plastid	30.98	26.28
HORVU2Hr1G004820.2	Barley	cytosol	8.06	25.6
Solyc06g074010.2.1	Tomato	nucleus	32.24	15.11

Protein Annotations

Gene3D:1.10.10.10	MapMan:13.1.2.2	MapMan:15.5.10	ncoils:Coil	InterPro:E2F	InterPro:E2F-DP_heterodim
InterPro:E2F_CC-MB	InterPro:E2F_WHTH_DNA-bd_dom	GO:GO:0000902	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005667	GO:GO:0005730	GO:GO:0006139	GO:GO:0006259	GO:GO:0006351
GO:GO:0006355	GO:GO:0007049	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009653
GO:GO:0009987	GO:GO:0016043	GO:GO:0019748	GO:GO:0019760	GO:GO:0042023	GO:GO:0043565
GO:GO:0044212	GO:GO:0046982	GO:GO:0046983	GO:GO:0051301	GO:GO:0051782	InterPro:IPR036388
UniProt:K4BVL4	PFAM:PF02319	PFAM:PF16421	PANTHER:PTHR12081	PANTHER:PTHR12081:SF51	SMART:SM01372
SUPFAM:SSF144074	SUPFAM:SSF46785	EnsemblPlantsGene:Solyc04g081350.2	EnsemblPlants:Solyc04g081350.2.1	UniParc:UPI000276605C	InterPro:WH-like_DNA-bd_sf
InterPro:WH_DNA-bd_sf	:	:	:	:	:

Description

Transcription factor E2FC [Source:Projected from Arabidopsis thaliana (AT1G47870) UniProtKB/Swiss-Prot;Acc:Q9FV70]

Coordinates

chr4:-:65362143..65368564

Molecular Weight (calculated)

44003.7 Da

IEP (calculated)

6.070

GRAVY (calculated)

-0.563

Length

397 amino acids

Sequence
(BLAST)

001: MSTTAGENVD LNLSLATPLH LRSSPSPTPT AIAVTPYRSH PRILSNLCSE SLTGNPQASA TFGFNPQNNE IEKSKEYNCG SGVSQRSLAS NYSPVEQAPS
101: ARTKQPSKRK SSRDTIEATK GINADLLDNL NLGVTYRYDN SLGLLTKKFI GLLQEADDGT LDLNHSAEVL EVAKRRIYDI TNVLEGIGLI EKTTKSRIRW
201: KGFQSTKSQG LDNQVSTLKG QIGYLSAEDH RLDSCIREKL EQIRNLESDM NCQKSLFLTE EDIRNLPYFR DKTLIAIKAP YASSIEVPDP CEDVDLERQY
301: KLILRSTTGP IDLFLLSKQG RQHEDITIKH DKSMDSVSAA KKMDDAYPSP AHPCSLDSTD SKLSGVHKIV PSHNSIDDDY WLRSEEAVSA TALWGIE

Best Arabidopsis Sequence Match ( AT1G47870.2 )
(BLAST)

001: MAATSNSGED PTLSYHHRSP FRFELLQSIS SSDPRYSSLT PSSTNRPFSV SQSLPNSQLS PLISPHWDDS YSQITQKVKS RKNHRIQLGS IANMSGGESI
101: DIAKVIVKQE SSPQNVKRVY NKSKGGTKLL KAGKRMANGE VQNGGLNGAS INCRYDSSLG LLTKKFVKLI QEAEDGTLDL NYCAVVLEVQ KRRIYDITNV
201: LEGIGLIEKT TKNHIRWKGA DNLGQKDLGD QISRLKSEVE SMQSEESRLD DLIRERQEAL RSLEEDDYCR RYMFMTEEDI TSLPRFQNQT LLAIKAPTAS
301: YIEVPDPDEM SFPQQYRMVI RSRMGPIDVY LLSKYKGDSA ETSDKLGNES DQKAPVGVDT PSLKIVTSDT DLKADYWFES DAEVSLTDLW SNFNS

Arabidopsis Description

E2FCE2FC [Source:UniProtKB/TrEMBL;Acc:A0A178WB46]
SUBAcon: [nucleus,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.