CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX72643
CDX73827
CDX80511
CDX80516
CDX80867	cytosol, nucleus
CDX88180
CDX92158
CDX95824
CDY00765
CDY05493
CDY08440
CDY11252	cytosol, nucleus
CDY19801
CDY29570
CDY42141
CDY44365	cytosol, nucleus
CDY46883
CDY49834
CDY50559
CDY52391
CDY52614
CDY54909

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G47870.1	CDX73827	AT3G12280.1	22921914
AT1G47870.1	CDY00765	AT3G12280.1	22921914
AT1G47870.1	CDY08440	AT3G12280.1	22921914
AT1G47870.1	CDY42141	AT3G12280.1	22921914
AT1G47870.1	CDY50559	AT3G12280.1	22921914
AT1G47870.1	CDY52391	AT3G12280.1	22921914
AT1G47870.1	CDY52614	AT3G12280.1	22921914
AT1G47870.1	CDX92158	AT3G17760.1	20706207
AT1G47870.1	CDX95824	AT3G17760.1	20706207
AT1G47870.1	CDY46883	AT3G17760.1	20706207
AT1G47870.1	CDY49834	AT3G17760.1	20706207
AT1G47870.1	CDX72643	AT4G37630.1	20407024
AT1G47870.1	CDY29570	AT4G37630.1	20407024
AT1G47870.1	CDX80867	AT5G03415.1	11891240
AT1G47870.1	CDY11252	AT5G03415.1	11891240
AT1G47870.1	CDY44365	AT5G03415.1	11891240
AT1G47870.1	CDX80867	AT5G03415.1	20407024
AT1G47870.1	CDY11252	AT5G03415.1	20407024
AT1G47870.1	CDY44365	AT5G03415.1	20407024
AT1G47870.1	CDX80867	AT5G03415.1	20407024
AT1G47870.1	CDY11252	AT5G03415.1	20407024
AT1G47870.1	CDY44365	AT5G03415.1	20407024
AT1G47870.1	CDX80511	AT5G25460.1	20706207
AT1G47870.1	CDX80516	AT5G25460.1	20706207
AT1G47870.1	CDX88180	AT5G25460.1	20706207
AT1G47870.1	CDY05493	AT5G25460.1	20706207
AT1G47870.1	CDY19801	AT5G25460.1	20706207
AT1G47870.1	CDY54909	AT5G25460.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY16998	Canola	nucleus	91.78	94.28
AT1G47870.1	Thale cress	nucleus, plastid	72.41	68.94
KRH61047	Soybean	cytosol, nucleus, plastid	38.2	40.56
KRH51709	Soybean	nucleus	41.38	36.62
VIT_18s0001g14110.t01	Wine grape	nucleus	43.5	36.53
PGSC0003DMT400009682	Potato	plastid	36.87	34.75
Solyc04g081350.2.1	Tomato	plastid	36.34	34.51
GSMUA_Achr4P17950_001	Banana	nucleus	36.07	33.66
CDX98588	Canola	nucleus	37.93	32.28
CDX92373	Canola	nucleus	37.67	32.05
CDX84581	Canola	plastid	38.46	31.25
CDX70990	Canola	nucleus	37.14	30.5
KRH07603	Soybean	cytosol	15.12	30.16
TraesCS2A01G031800.1	Wheat	plastid	35.54	29.65
Os04t0112200-00	Rice	nucleus, plastid	37.4	29.38
Zm00001d004512_P001	Maize	plastid	36.34	29.27
CDY43755	Canola	plastid	37.93	29.24
CDX84164	Canola	plastid	37.14	29.05
CDX88807	Canola	cytosol	36.87	28.78
TraesCS2D01G031400.1	Wheat	plastid	34.75	28.54
TraesCS2B01G043500.1	Wheat	plastid	34.75	28.36
EES11756	Sorghum	plastid	36.6	28.16
CDX79651	Canola	plastid	37.67	27.36
HORVU2Hr1G004820.2	Barley	cytosol	8.75	26.4
CDX75078	Canola	plastid	37.14	26.22

Protein Annotations

Gene3D:1.10.10.10	MapMan:13.1.2.2	MapMan:15.5.10	GO:A0A078FYB3	UniProt:A0A078FYB3	EnsemblPlants:CDY17797
ProteinID:CDY17797	ProteinID:CDY17797.1	ncoils:Coil	InterPro:E2F	InterPro:E2F-DP_heterodim	InterPro:E2F_CC-MB
InterPro:E2F_WHTH_DNA-bd_dom	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005667
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0046983	EnsemblPlantsGene:GSBRNA2T00002070001	InterPro:IPR036388	PFAM:PF02319	PFAM:PF16421
PANTHER:PTHR12081	PANTHER:PTHR12081:SF51	SMART:SM01372	SUPFAM:SSF144074	SUPFAM:SSF46785	UniParc:UPI0004EE3AFB
InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	SEG:seg	:	:	:

Description

BnaC08g04110DBnaC08g04110D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FYB3]

Coordinates

chrLK032078:-:32821..35318

Molecular Weight (calculated)

42471.0 Da

IEP (calculated)

5.507

GRAVY (calculated)

-0.664

Length

377 amino acids

Sequence
(BLAST)

001: MAATSKSGED PSLSYNHRSP FRFELIHSPS PTDPLQSSSS TPSSTNRPLS VPQPLPNAQS PQIQAHWDES FSPITQKLQK SRKNHSISSS SMPGETIDIA
101: KVIVKQESPQ DNIKRGTKSK VTKLSKAVKR EGLQLSGPNG SNNCRYDSSL GLLTKKFVNL IREAEDGSLD LNYCADVLEV QKRRIYDITN VLEGVGLIEK
201: TTKNHIRWKG ADNLGQLELG NQISRLKLEV ESMQSEENRL DDLIRERQEA LRSLEEDEHC KRYMFMTEED ITSLPCFHNQ TLLAIKAPTA SCIEVPDPDE
301: VMSFPQRQYR MVIRSRMGPI DVFLLSKHKG DSSMETDESA VDTSSLKIVT SDTDLKTDYW FESGEEVTLT DLWNNFC

Best Arabidopsis Sequence Match ( AT1G47870.1 )
(BLAST)

001: MAATSNSGED PTLSYHHRSP FRFELLQSIS SSDPRYSSLT PSSTNRPFSV SQSLPNSQLS PLISPHWDDS YSQITQKVQK SRKNHRIQLG SIANMSGGES
101: IDIAKVIVKQ ESSPQNVKRV YNKSKGGTKL LKAGKRMANG EVQNGGLNGA SINCRYDSSL GLLTKKFVKL IQEAEDGTLD LNYCAVVLEV QKRRIYDITN
201: VLEGIGLIEK TTKNHIRWKG ADNLGQKDLG DQISRLKSEV ESMQSEESRL DDLIRERQEA LRSLEEDDYC RRYMFMTEED ITSLPRFQNQ TLLAIKAPTA
301: SYIEVPDPDE MSFPQQYRMV IRSRMGPIDV YLLSKYKGDS AETSDKLGNE SDQKAPVGVD TPSLKIVTSD TDLKADYWFE SDAEVSLTDL WSNFNS

Arabidopsis Description

E2FCE2FC [Source:UniProtKB/TrEMBL;Acc:A0A178WB46]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.