Factsheet for GSMUA_Achr4P17950_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr1P14570_001
GSMUA_Achr2P08300_001
GSMUA_Achr2P17020_001
GSMUA_Achr4P07110_001
GSMUA_Achr5P12500_001	cytosol, nucleus
GSMUA_Achr6P07740_001
GSMUA_Achr6P08220_001
GSMUA_Achr6P16910_001
GSMUA_Achr7P02370_001
GSMUA_Achr7P08400_001
GSMUA_Achr8P00470_001
GSMUA_Achr8P22810_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G47870.1	GSMUA_Achr6P08220_001	AT3G12280.1	22921914
AT1G47870.1	GSMUA_Achr8P00470_001	AT3G12280.1	22921914
AT1G47870.1	GSMUA_Achr7P02370_001	AT3G17760.1	20706207
AT1G47870.1	GSMUA_Achr8P22810_001	AT3G17760.1	20706207
AT1G47870.1	GSMUA_Achr10P...	AT4G37630.1	20407024
AT1G47870.1	GSMUA_Achr4P07110_001	AT4G37630.1	20407024
AT1G47870.1	GSMUA_Achr6P07740_001	AT4G37630.1	20407024
AT1G47870.1	GSMUA_Achr6P16910_001	AT4G37630.1	20407024
AT1G47870.1	GSMUA_Achr5P12500_001	AT5G03415.1	11891240
AT1G47870.1	GSMUA_Achr5P12500_001	AT5G03415.1	20407024
AT1G47870.1	GSMUA_Achr5P12500_001	AT5G03415.1	20407024
AT1G47870.1	GSMUA_Achr1P14570_001	AT5G25460.1	20706207
AT1G47870.1	GSMUA_Achr2P08300_001	AT5G25460.1	20706207
AT1G47870.1	GSMUA_Achr2P17020_001	AT5G25460.1	20706207
AT1G47870.1	GSMUA_Achr7P08400_001	AT5G25460.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH61047	Soybean	cytosol, nucleus, plastid	33.66	38.31
GSMUA_Achr5P17430_001	Banana	plastid	20.05	38.21
Bra014096.1-P	Field mustard	nucleus	33.91	37.33
CDY16998	Canola	nucleus	33.91	37.33
GSMUA_Achr6P18220_001	Banana	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	37.62	37.16
CDY17797	Canola	nucleus	33.66	36.07
GSMUA_Achr2P20420_001	Banana	nucleus	36.63	35.41
GSMUA_Achr10P...	Banana	nucleus, plastid	37.87	34.77
AT1G47870.1	Thale cress	nucleus, plastid	32.18	32.83
GSMUA_Achr6P07100_001	Banana	mitochondrion	38.12	32.49
KRH51709	Soybean	nucleus	34.16	32.39
VIT_18s0001g14110.t01	Wine grape	nucleus	35.4	31.85
TraesCS2A01G031800.1	Wheat	plastid	35.4	31.64
TraesCS2D01G031400.1	Wheat	plastid	35.15	30.94
TraesCS2B01G043500.1	Wheat	plastid	34.9	30.52
Solyc04g081350.2.1	Tomato	plastid	29.95	30.48
Os04t0112200-00	Rice	nucleus, plastid	36.14	30.42
Zm00001d004512_P001	Maize	plastid	34.41	29.7
PGSC0003DMT400009682	Potato	plastid	29.21	29.5
EES11756	Sorghum	plastid	34.9	28.78
KRH07603	Soybean	cytosol	13.37	28.57
HORVU2Hr1G004820.2	Barley	cytosol	8.66	28.0

Protein Annotations

Gene3D:1.10.10.10	MapMan:13.1.2.2	MapMan:15.5.10	InterPro:E2F	InterPro:E2F-DP_heterodim	InterPro:E2F_CC-MB
InterPro:E2F_WHTH_DNA-bd_dom	GO:GO:0000902	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005667	GO:GO:0005730	GO:GO:0006139	GO:GO:0006259	GO:GO:0006351	GO:GO:0006355
GO:GO:0007049	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009653	GO:GO:0009987
GO:GO:0016043	GO:GO:0019748	GO:GO:0019760	GO:GO:0042023	GO:GO:0043565	GO:GO:0044212
GO:GO:0046982	GO:GO:0046983	GO:GO:0051301	GO:GO:0051782	EnsemblPlantsGene:GSMUA_Achr4G17950_001	EnsemblPlants:GSMUA_Achr4P17950_001
EnsemblPlants:GSMUA_Achr4T17950_001	InterPro:IPR036388	UniProt:M0SPV8	PFAM:PF02319	PFAM:PF16421	PANTHER:PTHR12081
PANTHER:PTHR12081:SF72	SMART:SM01372	SUPFAM:SSF144074	SUPFAM:SSF46785	UniParc:UPI000294EA80	InterPro:WH-like_DNA-bd_sf
InterPro:WH_DNA-bd_sf	:	:	:	:	:

Description

E2F family transcription factor protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr4G17950_001]

Coordinates

chr4:+:18454665..18460245

Molecular Weight (calculated)

45314.0 Da

IEP (calculated)

5.615

GRAVY (calculated)

-0.348

Length

404 amino acids

Sequence
(BLAST)

001: MHEAEKKDIQ SADGAINQAL KEEFNGSTIP TGLGIAIKRQ RKTKLKSKHL ELHTSGSTDG NSGGHFIHLL YDIRYTCSTH LNPLASNSCR YDSSLGLLTK
101: KFIDLLHKAK DGSLDLNTAA ETLEVQKRRI YDITNVLEGV GLIEKTFKNK IRWKGIDMSR PKELDDQIAR LKVCHLGNAV PYKSILAEVK ALYSEDCRLD
201: EMIREIQESL WVFTEDENHK KGLYLTKEDI TSIPCLQDAV LIAIKAPHGT SVEVPDPDEG IDFPQRRYQI FLRSSIGPIN CFLISNHMDR IGASNHSPQE
301: AATDSCIQSS SSNNGISLQP TEQDAGQGYE LEDPVPPRIL LDSIISNDCM GGIVKIVPSD VDIEADYWLF SDLRSSITDA WRTECILELN RTRSCIFLFL
401: MQIY

Best Arabidopsis Sequence Match ( AT5G22220.2 )
(BLAST)

001: MSEEVPQQFP SSKRQLHPSL SSMKPPLVAP GEYHRFDAAE TRGGGAVADQ VVSDAIVIKS TLKRKTDLVN QIVEVNELNT GVLQTPVSGK GGKAKKTSRS
101: AKSNKSGTLA SGSNAGSPGN NFAQAGTCRY DSSLGLLTKK FINLIKQAED GILDLNKAAD TLEVQKRRIY DITNVLEGIG LIEKTLKNRI QWKGLDVSKP
201: GETIESIANL QDEVQNLAAE EARLDDQIRE SQERLTSLSE DENNKRLLFV TENDIKNLPC FQNKTLIAVK APHGTTLEVP DPDEAGGYQR RYRIILRSTM
301: GPIDVYLVSQ FEESFEDIPQ ADEPSNVPDE PSNVPDVPSN LPSTSGLPEN HDVSMPMKEE STERNMETQE VDDTQRVYSD IESHDFVDGI MKIVPPDLDM
401: GVDYWFRSEV GEVSITDMWP DESGPDWNQM ITFDQDHAGP SDNKILEQPQ TPSSPTPEES TATRSPTGS

Arabidopsis Description

E2FBTranscription factor E2FB [Source:UniProtKB/Swiss-Prot;Acc:Q9FV71]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.