Factsheet for VIT_18s0001g14110.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_04s0008g02780.t01
VIT_04s0008g05010.t01
VIT_07s0129g00200.t01
VIT_08s0040g01300.t01	cytosol, nucleus
VIT_08s0040g01330.t01	cytosol, nucleus
VIT_17s0000g00920.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G47870.1	VIT_04s0008g02780.t01	AT3G12280.1	22921914
AT1G47870.1	VIT_17s0000g00920.t01	AT3G17760.1	20706207
AT1G47870.1	VIT_07s0129g00200.t01	AT4G37630.1	20407024
AT1G47870.1	VIT_08s0040g01300.t01	AT5G03415.1	11891240
AT1G47870.1	VIT_08s0040g01330.t01	AT5G03415.1	11891240
AT1G47870.1	VIT_08s0040g01300.t01	AT5G03415.1	20407024
AT1G47870.1	VIT_08s0040g01330.t01	AT5G03415.1	20407024
AT1G47870.1	VIT_08s0040g01300.t01	AT5G03415.1	20407024
AT1G47870.1	VIT_08s0040g01330.t01	AT5G03415.1	20407024
AT1G47870.1	VIT_04s0008g05010.t01	AT5G25460.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH61047	Soybean	cytosol, nucleus, plastid	39.42	49.86
Bra014096.1-P	Field mustard	nucleus	36.53	44.69
CDY16998	Canola	nucleus	36.53	44.69
KRH51709	Soybean	nucleus	41.87	44.13
CDY17797	Canola	nucleus	36.53	43.5
PGSC0003DMT400009682	Potato	plastid	38.53	43.25
Solyc04g081350.2.1	Tomato	plastid	38.08	43.07
AT1G47870.1	Thale cress	nucleus, plastid	37.42	42.42
KRH07603	Soybean	cytosol	17.15	40.74
VIT_08s0007g02510.t01	Wine grape	plastid	41.65	40.13
VIT_06s0080g01110.t01	Wine grape	nucleus	39.64	39.91
GSMUA_Achr4P17950_001	Banana	nucleus	31.85	35.4
Zm00001d004512_P001	Maize	plastid	31.4	30.13
Os04t0112200-00	Rice	nucleus, plastid	32.07	30.0
EES11756	Sorghum	plastid	32.29	29.59
TraesCS2A01G031800.1	Wheat	plastid	29.4	29.2
TraesCS2B01G043500.1	Wheat	plastid	29.84	29.0
TraesCS2D01G031400.1	Wheat	plastid	29.62	28.98
HORVU2Hr1G004820.2	Barley	cytosol	7.57	27.2

Protein Annotations

Gene3D:1.10.10.10	EntrezGene:100247139	wikigene:100247139	MapMan:13.1.2.2	MapMan:15.5.10	ProteinID:CCB46028
ProteinID:CCB46028.1	InterPro:E2F	InterPro:E2F-DP_heterodim	InterPro:E2F_CC-MB	InterPro:E2F_WHTH_DNA-bd_dom	UniProt:F6H080
EMBL:FN595227	GO:GO:0000902	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005667	GO:GO:0005730	GO:GO:0006139	GO:GO:0006259	GO:GO:0006351	GO:GO:0006355
GO:GO:0007049	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009653	GO:GO:0009987
GO:GO:0016043	GO:GO:0019748	GO:GO:0019760	GO:GO:0042023	GO:GO:0043565	GO:GO:0044212
GO:GO:0046982	GO:GO:0046983	GO:GO:0051301	GO:GO:0051782	InterPro:IPR036388	EntrezGene:LOC100247139
wikigene:LOC100247139	PFAM:PF02319	PFAM:PF16421	PANTHER:PTHR12081	PANTHER:PTHR12081:SF51	SMART:SM01372
SUPFAM:SSF144074	SUPFAM:SSF46785	TIGR:TC59570	UniParc:UPI0002109D47	ArrayExpress:VIT_18s0001g14110	EnsemblPlantsGene:VIT_18s0001g14110
EnsemblPlants:VIT_18s0001g14110.t01	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	RefSeq:XP_002280139	RefSeq:XP_002280139.2	RefSeq:XP_010664799.1

Description

No Description!

Coordinates

chr18:-:12151849..12158339

Molecular Weight (calculated)

50233.4 Da

IEP (calculated)

4.723

GRAVY (calculated)

-0.682

Length

449 amino acids

Sequence
(BLAST)

001: MAVWGDDPSL SNQQSRFQSD TRNPSLNPFF PSSQRKPHLF PFFSCPMNDS SFVSDTRTHC HSDDRQSAFV KLPLKQTNEI DHCKGQTSRQ ATLDGHGEEM
101: KFPSLEPESC VGGKQQHSKS KVSKNAKSGA QRSNAESPNI LNPVVTCRYD SSLGLLTKKF ISLIQEAKDG TLDLNRTADV LEVQKRRIYD ITNVLEGIGL
201: IEKTSKNHIS WKGFDMSGPQ KMDNEVTRLK AEVERLYAEE CRLDDCIREK QELLRAIAGD ENCQKHLFLT EEDITTLPCF QNQTLIAIKA PQASSVEVPD
301: PDEDIGFSQR QFRIIIRSTT GPIDLYLLSK YEGQSEDITV RRTKSLDYSV EDSGCNKLQD AGPFSSLGSE GSGIQKIIPS DFKIDDDYWL RSDPEVSITD
401: LWANEDWAQE NDIFQEDSIT SDASLAQTQP SLRGSLSEPD KNQAVGCSG

Best Arabidopsis Sequence Match ( AT1G47870.2 )
(BLAST)

001: MAATSNSGED PTLSYHHRSP FRFELLQSIS SSDPRYSSLT PSSTNRPFSV SQSLPNSQLS PLISPHWDDS YSQITQKVKS RKNHRIQLGS IANMSGGESI
101: DIAKVIVKQE SSPQNVKRVY NKSKGGTKLL KAGKRMANGE VQNGGLNGAS INCRYDSSLG LLTKKFVKLI QEAEDGTLDL NYCAVVLEVQ KRRIYDITNV
201: LEGIGLIEKT TKNHIRWKGA DNLGQKDLGD QISRLKSEVE SMQSEESRLD DLIRERQEAL RSLEEDDYCR RYMFMTEEDI TSLPRFQNQT LLAIKAPTAS
301: YIEVPDPDEM SFPQQYRMVI RSRMGPIDVY LLSKYKGDSA ETSDKLGNES DQKAPVGVDT PSLKIVTSDT DLKADYWFES DAEVSLTDLW SNFNS

Arabidopsis Description

E2FCE2FC [Source:UniProtKB/TrEMBL;Acc:A0A178WB46]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.