Factsheet for GSMUA_Achr2P20420_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	nucleus, plastid	67.94	64.55
GSMUA_Achr6P18220_001	Banana	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	57.42	58.68
GSMUA_Achr5P17430_001	Banana	plastid	29.43	58.02
GSMUA_Achr6P07100_001	Banana	mitochondrion	64.35	56.75
VIT_06s0080g01110.t01	Wine grape	nucleus	57.66	54.04
VIT_08s0007g02510.t01	Wine grape	plastid	59.81	53.65
Solyc11g068800.1.1	Tomato	mitochondrion, nucleus	53.59	49.89
KRH72218	Soybean	nucleus	55.5	49.57
KRH25298	Soybean	nucleus	53.35	49.56
KRH32815	Soybean	nucleus	55.02	49.36
PGSC0003DMT400042347	Potato	plastid	56.22	49.16
KRH30372	Soybean	nucleus	53.83	48.91
Solyc01g007760.2.1	Tomato	plastid	55.98	48.85
PGSC0003DMT400015188	Potato	nucleus	50.96	48.08
PGSC0003DMT400050512	Potato	mitochondrion, nucleus	50.96	47.02
CDX84164	Canola	plastid	49.76	43.15
CDX92373	Canola	nucleus	45.69	43.12
CDX98588	Canola	nucleus	45.69	43.12
Bra005305.1-P	Field mustard	plastid	49.52	43.04
Bra002398.1-P	Field mustard	nucleus	45.45	42.89
CDX84581	Canola	plastid	47.37	42.67
Bra023047.1-P	Field mustard	plastid	47.85	42.64
AT5G22220.2	Thale cress	cytosol	47.37	42.22
Bra017268.1-P	Field mustard	plastid	49.04	42.09
CDX70990	Canola	nucleus	45.69	41.61
CDY43755	Canola	plastid	48.33	41.31
Bra006615.1-P	Field mustard	nucleus	45.22	40.82
CDX88807	Canola	cytosol	45.45	39.34
CDX75078	Canola	plastid	49.52	38.76
CDX79651	Canola	plastid	46.65	37.57
GSMUA_Achr4P17950_001	Banana	nucleus	35.41	36.63
AT2G36010.2	Thale cress	plastid	44.02	35.8
PGSC0003DMT400013986	Potato	cytosol	7.89	33.67
KRH26172	Soybean	nucleus	14.83	32.98
Solyc06g074010.2.1	Tomato	nucleus	50.72	25.03

Protein Annotations

Gene3D:1.10.10.10	MapMan:13.1.2.2	MapMan:15.5.10	ncoils:Coil	InterPro:E2F	InterPro:E2F-DP_heterodim
InterPro:E2F_CC-MB	InterPro:E2F_WHTH_DNA-bd_dom	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005667	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0046983	EnsemblPlantsGene:GSMUA_Achr2G20420_001	EnsemblPlants:GSMUA_Achr2P20420_001	EnsemblPlants:GSMUA_Achr2T20420_001
InterPro:IPR036388	UniProt:M0S9N3	PFAM:PF02319	PFAM:PF16421	PANTHER:PTHR12081	PANTHER:PTHR12081:SF72
SMART:SM01372	SUPFAM:SSF144074	SUPFAM:SSF46785	UniParc:UPI000295F7DF	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf

Description

E2F family transcription factor protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr2G20420_001]

Coordinates

chr2:-:20238934..20242417

Molecular Weight (calculated)

46751.2 Da

IEP (calculated)

4.733

GRAVY (calculated)

-0.544

Length

418 amino acids

Sequence
(BLAST)

001: MSFIYIHFLK QKSVQEDNEV VEISEWTTSP GCAVGFTSPL LTPVSEKGRK TYSKSKVAKH NKSGGQTPVS NAGSPTGDNL TPVGSCRYDS SLGLLTKKFI
101: NLLKHTRDGI LDLNKAAEIL KVQKRRIYDI TNVLEGIGLI EKKLKNRIRW KGIDDLGSVE VDGDASKLQA ETESLTTKER RLDELISQMR EKLRELTEDE
201: SNQKWLFITE DDIKGLPCFQ NETLIAIKAP HGTTLEVPDP DEASRRTKSY LKRYRIVLRS TMGPIDVYLV SQFEEKFEEM SGVEIPPKLL PTSNSDSVEY
301: SMVPIVTEES RGNEMELDIQ QSERIWSDVN SSHDFGGGMM KIVPSDIDTE ADYWLLSDAG VSITEMWKTA PEIEWDAMGR FGTESTDDFI TDGATTPRPQ
401: TPPSGVVEVP SDATSSRR

Best Arabidopsis Sequence Match ( AT5G22220.3 )
(BLAST)

001: MSEEVPQQFP SSKRQLHPSL SSMKPPLVAP GEYHRFDAAE TRGGGAVADQ VVSDAIVIKS TLKRKTDLVN QIVEVNELNT GVLQTPVSGK GGKAKKTSRS
101: AKSNKSGTLA SGSNAGSPGN NFAQAGTCRY DSSLGLLTKK FINLIKQAED GILDLNKAAD TLEVQKRRIY DITNVLEGIG LIEKTLKNRI QWKGLDVSKP
201: GETIESIANL QDEVQNLAAE EARLDDQIRE SQERLTSLSE DENNKRLLFV TENDIKNLPC FQNKTLIAVK APHGTTLEVP DPDEAGGYQR RYRIILRSTM
301: GPIDVYLVSQ FEESFEDIPQ ADEPSNVPDE PSNVPDVPSN LPSTSGLPEN HDVSMPMKEE STERNMETQE VDDTQRVYSD IESHDFVDGI MKIVPPDLDM
401: GVDYWFRSEV GEVSITDMWP DEYWNQMITF DQDHAGPSDN KILEQPQTPS SPTPEESTAT RSPTGS

Arabidopsis Description

E2FBTranscription factor E2FB [Source:UniProtKB/Swiss-Prot;Acc:Q9FV71]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.